BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0010.p
         (89 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0911 [G] COG0366 Glycosidases                                       114   4e-26
BS_yvdL [G] COG0366 Glycosidases                                      111   3e-25
BH0872 [G] COG0366 Glycosidases                                       107   4e-24
BH3868 [G] COG0366 Glycosidases                                       107   4e-24
BS_treA [G] COG0366 Glycosidases                                      106   8e-24

>VC0911 [G] COG0366 Glycosidases
          Length = 562

 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 49/77 (63%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 1   MEDFEELIRELKKRGMHLMTDIVVNHSSTEHPWFQEARKSKDNPYRNYYIWRDPAPDGGV 60
           M+DFE+L++E  +RGM ++ DIVVNH+STEH WFQ A   +++PYR+YYIWR P  +GGV
Sbjct: 83  MQDFEQLLKEAHRRGMRIIMDIVVNHTSTEHAWFQSALGDRNSPYRDYYIWRKPV-NGGV 141

Query: 61  PNNWQSKFGGPAWQFDE 77
           PNNWQSKFGG AW  DE
Sbjct: 142 PNNWQSKFGGSAWALDE 158


>BS_yvdL [G] COG0366 Glycosidases
          Length = 561

 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 59/76 (77%)

Query: 2   EDFEELIRELKKRGMHLMTDIVVNHSSTEHPWFQEARKSKDNPYRNYYIWRDPAPDGGVP 61
           ED  +LI E+ KRGM ++ D+VVNH+S EH WF E+RKSKDNPYR+YY+W+DP PDG  P
Sbjct: 78  EDMFQLIDEVHKRGMKIVMDLVVNHTSDEHAWFAESRKSKDNPYRDYYLWKDPKPDGSEP 137

Query: 62  NNWQSKFGGPAWQFDE 77
           NNW S F G AW +DE
Sbjct: 138 NNWGSIFSGSAWTYDE 153


>BH0872 [G] COG0366 Glycosidases
          Length = 559

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 1   MEDFEELIRELKKRGMHLMTDIVVNHSSTEHPWFQEARKSKDNPYRNYYIWRDPAPDGGV 60
           MEDFE L+ E+  R M ++ DIVVNH+STEH WF+++ +SKDNPYR++YIW+DP   G  
Sbjct: 78  MEDFERLLTEVHDRKMKVIMDIVVNHTSTEHEWFKQSAQSKDNPYRDFYIWKDPVY-GLE 136

Query: 61  PNNWQSKFGGPAWQFD 76
           PNNWQSKFGG AW+FD
Sbjct: 137 PNNWQSKFGGSAWKFD 152


>BH3868 [G] COG0366 Glycosidases
          Length = 553

 Score =  107 bits (267), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 61/77 (79%)

Query: 1   MEDFEELIRELKKRGMHLMTDIVVNHSSTEHPWFQEARKSKDNPYRNYYIWRDPAPDGGV 60
           MEDF++L+ E+ +RGM L+ D+V+NH+S EHPWF E+R SK NP R++YIWRDP  DG  
Sbjct: 78  MEDFDQLLHEVHRRGMKLIIDLVINHTSDEHPWFIESRSSKVNPKRDWYIWRDPKEDGSE 137

Query: 61  PNNWQSKFGGPAWQFDE 77
           PNNW+S F G AW++D+
Sbjct: 138 PNNWESIFNGSAWEYDQ 154


>BS_treA [G] COG0366 Glycosidases
          Length = 565

 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 5/77 (6%), Positives = 12/77 (15%)

Query: 1   MEDFEELIRELKKRGMHLMTDIVVNHSSTEHPWFQEARKSKDNPYRNYYIWRDPAPDGGV 60
           M+  +          ++                          P            D  +
Sbjct: 81  MQQNQSGFDLRHFVNVNFTLPKEGEKYVPPEGQSLREHIDGLWPVLTRSTENTEKWDSLL 140

Query: 61  PNNWQSKFGGPAWQFDE 77
           P        G  ++   
Sbjct: 141 PLPEPYVVPGGRFREVY 157


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.138    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,483,835
Number of extensions: 258874
Number of successful extensions: 1987
Number of sequences better than 1.0e-05: 59
Number of HSP's gapped: 1949
Number of HSP's successfully gapped: 59
Length of query: 89
Length of database: 38,378,431
Length adjustment: 59
Effective length of query: 30
Effective length of database: 31,573,725
Effective search space: 947211750
Effective search space used: 947211750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)