BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0544.0007.p
         (73 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2398 [R] COG0595 Predicted hydrolase of the metallo-beta-lacta...    55   2e-08
SA0940 [R] COG0595 Predicted hydrolase of the metallo-beta-lacta...    54   5e-08
L89418 [R] COG0595 Predicted hydrolase of the metallo-beta-lacta...    54   8e-08
SP0121 [R] COG0595 Predicted hydrolase of the metallo-beta-lacta...    53   1e-07
BH2662 [R] COG0595 Predicted hydrolase of the metallo-beta-lacta...    52   3e-07

>BH2398 [R] COG0595 Predicted hydrolase of the metallo-beta-lactamase
          superfamily
          Length = 252

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 4/46 (8%), Positives = 11/46 (23%)

Query: 4  KMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLL 49
                    +        + +  +   +   V D G    + + L
Sbjct: 3  DWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTAL 48


>SA0940 [R] COG0595 Predicted hydrolase of the metallo-beta-lactamase
          superfamily
          Length = 252

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 4/38 (10%), Positives = 11/38 (28%)

Query: 12 IAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLL 49
            +        + +  +   +   V D G    + + L
Sbjct: 11 HFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTAL 48


>L89418 [R] COG0595 Predicted hydrolase of the metallo-beta-lactamase
          superfamily
          Length = 252

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 2/47 (4%), Positives = 5/47 (10%)

Query: 3  MKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLL 49
                           E+   + L        +             
Sbjct: 5  NPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQ 51


>SP0121 [R] COG0595 Predicted hydrolase of the metallo-beta-lactamase
          superfamily
          Length = 252

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 6/49 (12%), Positives = 12/49 (24%)

Query: 1  MSMKMTGERLWIAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLL 49
          MS       L  +A      +     +     + +           +LL
Sbjct: 1  MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALL 49


>BH2662 [R] COG0595 Predicted hydrolase of the metallo-beta-lactamase
          superfamily
          Length = 252

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 4/38 (10%), Positives = 11/38 (28%)

Query: 12 IAALGGVYEIGKNMYLLQYADDIIVIDCGSKFPDESLL 49
            +        + +  +   +   V D G    + + L
Sbjct: 11 HFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTAL 48


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,848,076
Number of extensions: 140861
Number of successful extensions: 314
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 314
Number of HSP's successfully gapped: 10
Length of query: 73
Length of database: 38,378,431
Length adjustment: 44
Effective length of query: 29
Effective length of database: 33,303,735
Effective search space: 965808315
Effective search space used: 965808315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)