BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0544.0005.p (189 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1006 [NT] COG0840 Methyl-accepting chemotaxis protein 88 9e-18 BS_yfmS [NT] COG0840 Methyl-accepting chemotaxis protein 86 4e-17 CAC0381 [NT] COG0840 Methyl-accepting chemotaxis protein 86 5e-17 BB0681 [NT] COG0840 Methyl-accepting chemotaxis protein 82 7e-16 Cj0144 [NT] COG0840 Methyl-accepting chemotaxis protein 78 6e-15 >BH1006 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 288 Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 1 VPVYDXXXXXXXXXXXXYTLENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSAT--- 57 +P++D +LE +K+ ++ S I V+ AA EE+S + Sbjct: 98 IPLHDSKGKVIGGVGMGTSLEKANKLFEMAESFSAI-------VEETAASIEEISDSVTK 150 Query: 58 -TAQILDNSR--KTVEES-NQVSKVTGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVV 113 T Q+ D S K V S Q+ +++ +R IS+Q+NLLGLNAAIEAAR G+ G GF VV Sbjct: 151 LTEQVTDVSSHMKNVSVSAEQIGEISSVVRGISDQSNLLGLNAAIEAARAGESGKGFSVV 210 Query: 114 ATEVRKLSVHTKEATKTIEDSLNTVQRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERL 173 A E+RKL+ ++KE I D NT+Q ++++ + + EF+ ++ + Sbjct: 211 ANEIRKLATNSKENVSQINDITNTIQDLLKKLNEAFSEIHQLTDTQAGSIEEFAATMQEI 270 Query: 174 NKTSGEMAK 182 ++ + ++AK Sbjct: 271 SRNAQDLAK 279 >BS_yfmS [NT] COG0840 Methyl-accepting chemotaxis protein Length = 286 Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 99/187 (52%), Gaps = 8/187 (4%) Query: 1 VPVYDXXXXXXXXXXXXYTLENEDKM----EQLTSSIEQISGQLVDMVQNVAAQSEELSA 56 +P++D +LE K+ E L++ +EQ + + D+ +++ S ++S Sbjct: 96 IPLHDENGRVIGGVGLGTSLEESSKLHDVAESLSAVVEQTAAAISDISESINGFSTQMSG 155 Query: 57 TTAQILDNSRKTVEESNQVSKVTGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATE 116 ++Q ++K E + +++ ++ ++ IS+Q+NLLGLNAAIEAAR G+ G GF VVA E Sbjct: 156 ISSQ----AKKVSESAGEIADISVTVKGISDQSNLLGLNAAIEAARAGESGKGFSVVADE 211 Query: 117 VRKLSVHTKEATKTIEDSLNTVQRSIRQMEKXXXXXXXXXXXXXXLVTEFSDVIERLNKT 176 +RKL+ H+KE I+ + ++ +E+ V + S ++ ++ + Sbjct: 212 IRKLATHSKENVGQIDQITKKIHSLLKGLEESIESINQHTDGQAAAVEQISATMQEISGS 271 Query: 177 SGEMAKF 183 + +AK Sbjct: 272 AQHLAKM 278 >CAC0381 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 282 Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 7/117 (5%) Query: 36 ISGQLVDMVQNVAAQSEE-------LSATTAQILDNSRKTVEESNQVSKVTGFIREISEQ 88 +S L D + NV+A EE LS IL N K +E + V F++ ++++ Sbjct: 124 LSSDLADTISNVSAAVEESTANIQTLSENNKDILVNVHKAIEHTKNSGSVLKFVQGVAKE 183 Query: 89 TNLLGLNAAIEAARVGQEGAGFGVVATEVRKLSVHTKEATKTIEDSLNTVQRSIRQM 145 TNLLG+NAAIEAAR G+ G GF VVA +RKLS T ++ K I + L ++ S++Q+ Sbjct: 184 TNLLGINAAIEAARAGEAGKGFSVVAQHIRKLSNSTSDSIKEINEVLKNIEESVQQI 240 >BB0681 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 636 Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 52/121 (42%), Positives = 77/121 (63%), Gaps = 5/121 (4%) Query: 20 LENEDKMEQLTSSIEQISGQLVDMVQNVAAQSEELSATTAQILDNSRKTV----EESNQV 75 +E +EQ+T++IEQIS + + +N AA +E+++ T + K+V E + Sbjct: 427 VEQASTLEQMTANIEQISQGVSENTEN-AATTEKIAVNTNERTKEGHKSVVKAIEAMTVI 485 Query: 76 SKVTGFIREISEQTNLLGLNAAIEAARVGQEGAGFGVVATEVRKLSVHTKEATKTIEDSL 135 ++ G I EI+ QTNLL LNA+IEAARVG++G GF VVA EVRKL+ +KE+ + I D Sbjct: 486 TEKIGIIDEITRQTNLLALNASIEAARVGEKGKGFEVVAAEVRKLADQSKESAREIIDIA 545 Query: 136 N 136 N Sbjct: 546 N 546 >Cj0144 [NT] COG0840 Methyl-accepting chemotaxis protein Length = 659 Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 42/98 (42%), Positives = 63/98 (64%) Query: 48 AAQSEELSATTAQILDNSRKTVEESNQVSKVTGFIREISEQTNLLGLNAAIEAARVGQEG 107 AA EE++++ + + + +S ++ VTG I +I++Q NLL LNAAIEAAR G+ G Sbjct: 504 AAALEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHG 563 Query: 108 AGFGVVATEVRKLSVHTKEATKTIEDSLNTVQRSIRQM 145 GF VVA EVRKL+ T+++ IE + N + +SI M Sbjct: 564 RGFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDM 601 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.308 0.124 0.307 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 9,123,218 Number of extensions: 264711 Number of successful extensions: 2227 Number of sequences better than 1.0e-05: 804 Number of HSP's gapped: 1632 Number of HSP's successfully gapped: 804 Length of query: 189 Length of database: 38,378,431 Length adjustment: 100 Effective length of query: 89 Effective length of database: 26,845,031 Effective search space: 2389207759 Effective search space used: 2389207759 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 113 (48.1 bits)