BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0017.p (360 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 246 4e-65 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 234 2e-61 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 228 9e-60 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 226 6e-59 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 220 3e-57 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 246 bits (628), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 129/302 (42%), Positives = 189/302 (62%), Gaps = 8/302 (2%) Query: 58 KKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGIKGIFTSDWVGLKYFDEFVH 117 K+QK L+L + ++++F+Y P++G MAF+++ G+ F +WVGL++F E Sbjct: 25 KQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFR--PGLS-FFEQEWVGLQHFIELFQ 81 Query: 118 DYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAFKRFVQTVSYLPHFISWVVV 177 D +F ++RNTL +S + +I F PIL A++LNEV++M FKR VQTVSYLPHF+SWVVV Sbjct: 82 DNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVV 141 Query: 178 VGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGLAVGSAIWKEMGWWTIIFLA 237 G+ LS D G+VN+ LM+ GF+ +P+ + +FW + S +WKEMGW +IIFLA Sbjct: 142 AGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLA 201 Query: 238 AITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXXXXXXXXXXXXXXXXNFEQA 297 A+ GI+P LYEAA++DGA R +I HITLPG++ FE+ Sbjct: 202 AMAGIDPQLYEAAKVDGASRWRQIWHITLPGIR-----PTILVILILSIGHLMAIGFEKQ 256 Query: 298 YLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSVISVILIFSSNFIAKRMSGS 357 +L GN + SE++ YA GL GR+SY AI + SV+ +IL+F +N I KR + Sbjct: 257 FLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQ 316 Query: 358 SL 359 S+ Sbjct: 317 SV 318 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 130/322 (40%), Positives = 189/322 (58%), Gaps = 14/322 (4%) Query: 45 SPQADSGR------LWKRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGI 98 P+ +G+ +K+ +QK L L +++L+IF Y P++G +AF+D+ + Sbjct: 24 PPKTPAGKPTGIKLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFRPA--- 80 Query: 99 KGIFTSDWVGLKYFDEFVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAF 158 + IF DW G K+F D +F +++RNTL +S + ++ F I LAI+LNE++N+ F Sbjct: 81 RPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNLTF 140 Query: 159 KRFVQTVSYLPHFISWVVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGL 218 KR VQT+SY+PHF+SWVV G+ A LS + G++N LM LG I EP+ L YFWG+ Sbjct: 141 KRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFWGI 200 Query: 219 AVGSAIWKEMGWWTIIFLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXX 278 S +WK +GW TII+LAAIT I+ YEAAEIDGA RL RI +ITLPGM+ Sbjct: 201 IGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMR-----PVI 255 Query: 279 XXXXXXXXXXXXXXNFEQAYLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSV 338 FE YL N +N +E + + + G+ G FS A A + ++V Sbjct: 256 VILLIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTV 315 Query: 339 ISVILIFSSNFIAKRMSGSSLF 360 +S I +FS+N IAKR+ + LF Sbjct: 316 VSFIFLFSANHIAKRLGEARLF 337 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 228 bits (582), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 120/306 (39%), Positives = 192/306 (62%), Gaps = 10/306 (3%) Query: 55 KRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGIKGIFTSDWVGLKYFDE 114 KR + K L+L + G+V+ +IF Y PM+G+++AF+DY G+ G S+WVG K+F+ Sbjct: 30 KRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTG---SEWVGFKHFER 86 Query: 115 FVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAFKRFVQTVSYLPHFISW 174 + F Q++RNTL+L +IF FP PI+LA++LNE++ M FKRFVQT+ Y+PHF+SW Sbjct: 87 LFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSW 146 Query: 175 VVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGLAVGSAIWKEMGWWTII 234 V+VV ++Y + D GV+N+ + S+ + +N L S ++F L + IW+E GW TII Sbjct: 147 VIVVSLTYVLFTTDGGVINEIIYSIT--GKNVNFLMSEDWFRPLYILQVIWREAGWATII 204 Query: 235 FLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXXXXXXXXXXXXXXXXNF 294 + AAI I+P+LYEAA++DGA R +I HITLP ++ F Sbjct: 205 YFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIR-----SVIVVLLILKIGDILELGF 259 Query: 295 EQAYLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSVISVILIFSSNFIAKRM 354 E +L N++N +EI TY + GL++G+FSY+ A+ +S++ +I++ +N++AK+ Sbjct: 260 EHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKF 319 Query: 355 SGSSLF 360 ++ Sbjct: 320 GEEGVY 325 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 226 bits (575), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 126/303 (41%), Positives = 193/303 (63%), Gaps = 10/303 (3%) Query: 58 KKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGIKGIFTSDWVGLKYFDEFVH 117 K+ K L+L + G+++ +IF Y PM+G+L+AFKDYS G + S+WVG YF +F Sbjct: 26 KRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYS---PYLGFWKSEWVGFDYFKDFFM 82 Query: 118 DYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAFKRFVQTVSYLPHFISWVVV 177 + F +++RNTL+L+ L ++FAFPAP++LA++LNEV+ +KR +QT Y+PHF+SW +V Sbjct: 83 NPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIV 142 Query: 178 VGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGLAVGSAIWKEMGWWTIIFLA 237 V +++ F + D GV+NK +MSL E ++ L+ ++F + V +IWKE GW TI+FLA Sbjct: 143 VSITFVFFTVDTGVINKLIMSL--TGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLA 200 Query: 238 AITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXXXXXXXXXXXXXXXXNFEQA 297 A+ ++ YEAA +DGAGR R+ HITLP ++ FEQ Sbjct: 201 ALATVDQEQYEAAIMDGAGRFRRMWHITLPAIR-----STIIVLLILRIGSFLNLGFEQV 255 Query: 298 YLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSVISVILIFSSNFIAKRMSGS 357 YL NS+N ++I TY + +G+ G +SY+ A+ L +SV+ +ILIF +N+IAK+ Sbjct: 256 YLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQE 315 Query: 358 SLF 360 LF Sbjct: 316 GLF 318 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 181/309 (58%), Gaps = 12/309 (3%) Query: 47 QADSGRLWKRFKKQKMLHLFVGLGMVFLVIFSYTPMFGILMAFKDYSISSGIKGIFTSDW 106 +A LW+R KKQK+L L G+V IF Y PM+G+L+AFKDY+ +KGI SDW Sbjct: 4 KAKQVSLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYN---PLKGILGSDW 60 Query: 107 VGLKYFDEFVHDYQFGQIVRNTLILSFLKVIFAFPAPILLAIMLNEVKNMAFKRFVQTVS 166 +G F +F+ FG ++ NTL LS ++ F PI+LAIMLN++ + K+ +Q + Sbjct: 61 IGFSEFTKFISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLIL 120 Query: 167 YLPHFISWVVVVGVSYAFLSADVGVVNKALMSLGFIHEPLNILTSPNYFWGLAVGSAIWK 226 Y P+FIS VV+VG+ + F S G +N L G + LT+P++F L + S IW+ Sbjct: 121 YAPNFISVVVIVGMIFLFFSVG-GPINNFLSMFGMKAD---FLTNPDFFRPLYIFSGIWQ 176 Query: 227 EMGWWTIIFLAAITGINPALYEAAEIDGAGRLARIRHITLPGMKXXXXXXXXXXXXXXXX 286 MGW + ++ A + ++PAL EAA +DGA RI HI +P +K Sbjct: 177 GMGWASTLYTATLVNVDPALVEAARLDGANIFQRIWHIDIPALK-----PIMVIQFVLAA 231 Query: 287 XXXXXXNFEQAYLFGNSINNPTSEIVQTYAFKVGLRDGRFSYAAAIDLIQSVISVILIFS 346 +E+A+L S+N PTSEI+ TY +KVGL G +SY+ A+ L +VI+V+L+ + Sbjct: 232 GGIMNVGYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVA 291 Query: 347 SNFIAKRMS 355 N I KRM+ Sbjct: 292 VNQIVKRMN 300 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.141 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,498,939 Number of extensions: 911093 Number of successful extensions: 3597 Number of sequences better than 1.0e-05: 116 Number of HSP's gapped: 3520 Number of HSP's successfully gapped: 116 Length of query: 360 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 252 Effective length of database: 25,922,359 Effective search space: 6532434468 Effective search space used: 6532434468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)