BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0016.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 158 1e-38 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 155 9e-38 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 153 3e-37 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 149 7e-36 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 143 3e-34 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 89/286 (31%), Positives = 157/286 (54%), Gaps = 1/286 (0%) Query: 8 KDLLLDSIIYTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFLD 67 K+ L D +IY L + L + PF +V+ ASF + + L P +F+L+ Y+ Sbjct: 2 KNRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFS 61 Query: 68 DPKWYRAFIVTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIP 127 Y++ +V+V RDL+ + +++F M FSGG+IP Sbjct: 62 TDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIP 121 Query: 128 YYVVLRSIGLLNSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFRI 187 ++V++S+GLL+S+ I+P+ ++ F L+I +FF+ IP L+ESA IDG + IFF+I Sbjct: 122 TFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKI 181 Query: 188 ILPVSMPLLATMALFLGVGQWNSWLDSAYFVQSENLRTLAFRMMEVINKSNSPMDXXXXX 247 +LP+S+P +AT++LF V WN+++ + ++ + + +++ S S M Sbjct: 182 VLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVS-SGMQGDMSE 240 Query: 248 XXXXXGVTSFSLQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVKG 293 ++++ +VV+ +P++ VYPF+QK+F G +LGSVKG Sbjct: 241 MGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 152/277 (54%) Query: 17 YTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFLDDPKWYRAFI 76 Y LFL + PF +++ SF + L L+P +F+L+ Y+ +R+ I Sbjct: 17 YLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLI 76 Query: 77 VTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIPYYVVLRSIG 136 ++++ +DL ++ +++F M FSGG+IP ++V+RS+G Sbjct: 77 ISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLG 136 Query: 137 LLNSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFRIILPVSMPLL 196 LL+++ IIP+ ++ F L+I +FF+ IP L+ESA IDG + IFFRI+ P+SMP + Sbjct: 137 LLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAI 196 Query: 197 ATMALFLGVGQWNSWLDSAYFVQSENLRTLAFRMMEVINKSNSPMDXXXXXXXXXXGVTS 256 AT++LF V WN+++ + ++ ++ + + +++ S+ Sbjct: 197 ATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPE 256 Query: 257 FSLQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVKG 293 ++++ +VV+ +P++ VYPF+QK+F G +LGSVKG Sbjct: 257 QTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 85/267 (31%), Positives = 146/267 (54%), Gaps = 8/267 (2%) Query: 30 PFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFLDDPKWYRAFIVTVVRXXXXXXXX 89 PF Y++ SF ++ +++P++FTL+ YK P + R+ V++ Sbjct: 34 PFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQ 93 Query: 90 XXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIPYYVVLRSIGLLNSFGVYIIPSM 149 R + L ++IF+M FSGG+IP Y+V++S+GLL+++ I+P Sbjct: 94 LFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMA 153 Query: 150 LSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFRIILPVSMPLLATMALFLGVGQWN 209 ++ F L+I +FF+++P EL+ESA IDG E +F+RI LP+S P++AT ALF VG WN Sbjct: 154 INPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWN 213 Query: 210 SWLDSAYFVQSENLRTLAFRMMEVI---NKSNSPMDXXXXXXXXXXGVTSFSLQVTAMVV 266 + + ++ L + +V + + + D G+ ++ +V+ Sbjct: 214 DFFHALLYINDSAKWPLQMVLRQVTILSDLTATNGDTMQNAVPPEQGI-----KLAVIVI 268 Query: 267 SIVPIICVYPFLQKYFVHGIMLGSVKG 293 + +PI+ VYPFLQK+F G+++GSVKG Sbjct: 269 ATLPILAVYPFLQKHFAKGMLIGSVKG 295 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 159/288 (55%), Gaps = 4/288 (1%) Query: 7 QKDLLLDSIIYTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYKMFL 66 ++ LLL+ II ++F++++T+L P Y+++ASF + G+ P +T+E Y+ Sbjct: 21 RRILLLNKII--IVFIVLMTLL-PLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVF 77 Query: 67 DDPKWYRAFIVTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLI 126 D R FI +++ +DL+ + +I M+F GGL+ Sbjct: 78 SDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLV 137 Query: 127 PYYVVLRSIGLLNSFGVYIIPSMLSTFFLLIAISFFREIPGELKESAHIDGAGEFVIFFR 186 P Y++++ +G+LN+ I+P ++ + +++A ++F+ +P EL E+A IDGA + IFF+ Sbjct: 138 PTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGANDLQIFFK 197 Query: 187 IILPVSMPLLATMALFLGVGQWNSWLDSAYFVQSENLRTLAFRMMEVINKSNSPMDXXXX 246 I+LP++ P++ + L+ VGQWNS+ D+ +++ NL L + +++ +S D Sbjct: 198 IMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGA 257 Query: 247 XXXXXXGVTSFSL-QVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVKG 293 L + +V+S +P+I +YPF QKYF GIM GS+KG Sbjct: 258 QAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 14/292 (4%) Query: 9 DLLLDSIIYTVLFLIMLTMLYPFYYVLIASFNKGSDSLLGGVYLWPRSFTLENYK-MFLD 67 ++ + ++I T FL ++PF YV+I S + G + P ++ + Y+ ++ Sbjct: 36 NIFMHTLIGTFAFLC----IFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQM 91 Query: 68 DPKWYRAFIVTVVRXXXXXXXXXXXXXXXXXXXXHRDLLFSKLYFAIIIFAMYFSGGLIP 127 + +RA+ VT+ + L+ KL+ I F M FSGG++P Sbjct: 92 RSEVFRAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVP 151 Query: 128 YYVVLRS-IGLLNSFGVYIIPSMLSTFFLLIAISFF-REIPGELKESAHIDGAGEFVIFF 185 +Y+V+ +GL NS I+P ++ F+++I +FF R +P + ESA IDGAGEF IFF Sbjct: 152 FYIVMTQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFF 211 Query: 186 RIILPVSMPLLATMALFLGVGQWNSWLDSAYFVQSENLRTLAFRMMEVIN-----KSNSP 240 +I+LP+S+P +AT+ALF + WN W ++ F+ L L +M + N + N+ Sbjct: 212 KIVLPLSIPGIATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAM 271 Query: 241 MDXXXXXXXXXXGVTSFSLQVTAMVVSIVPIICVYPFLQKYFVHGIMLGSVK 292 + + S ++ +V++ +PI YPF QKYFV G+ +G VK Sbjct: 272 LS--SQNSALLDSIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.146 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,519,248 Number of extensions: 615358 Number of successful extensions: 3965 Number of sequences better than 1.0e-05: 134 Number of HSP's gapped: 3798 Number of HSP's successfully gapped: 134 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)