BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0542.0003.p (319 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YMR041c [C] COG0667 Predicted oxidoreductases (related to aryl-a... 129 8e-30 SMa1403 [C] COG0667 Predicted oxidoreductases (related to aryl-a... 100 2e-21 BS_yqkF [C] COG0667 Predicted oxidoreductases (related to aryl-a... 92 1e-18 BH1011 [C] COG0667 Predicted oxidoreductases (related to aryl-al... 89 9e-18 SMb20500 [C] COG0667 Predicted oxidoreductases (related to aryl-... 89 1e-17 >YMR041c [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 14/229 (6%), Positives = 43/229 (18%), Gaps = 17/229 (7%) Query: 39 VHTAIDLGINLIDVSPYYGLMKAETVLGEALQTV----PRDKYILSTKAGRYGEGEFDFS 94 + + + P + + + + + ++ D Sbjct: 41 AQGINLIDVAEMYPVPPRP--ETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKG 98 Query: 95 RERIIRSAEESMGRLGTDYLDILLLHDVEFGPVEQVMEEGIPALEELKQAGKIRYYGVSG 154 +++ D L L ++ V +L + VS Sbjct: 99 IRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQ-RPTNCFGKLGYSWTDSAPAVSL 157 Query: 155 LPLSVFEKVLPQT--------RLDVILSYCHYSLNDTTXXXXXXXXEKSGTGLM--NASP 204 L + + Y ++ L+ + Sbjct: 158 LDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEV 217 Query: 205 ISMGLLSNRKVPDWHPAGAEIQAACQRAAEYCRDKGEDIAKLAVQFSTA 253 + V + + + G + + Sbjct: 218 GLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYS 266 >SMa1403 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 11/323 (3%), Positives = 47/323 (14%), Gaps = 40/323 (12%) Query: 4 RKLGNTGLEXXXXXXXXXXXXXXXREVPRDEAILTVHTAIDLGINLIDVSPYYGLMKAET 63 + + + + + V P Sbjct: 7 PHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTE 66 Query: 64 VLGEALQTVPRDKYILSTKAGRY-------------------GEGEFDFSRERIIRSAEE 104 + L + E + +++ Sbjct: 67 TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYL 126 Query: 105 SMGRLGTDYLDILLLHDVE-----------FGPVEQVMEEGIPALEELKQAGKIRYYGVS 153 + ++ + ++ K + Sbjct: 127 DLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLL---DTLDALAEYQRAGKIRYIGVSNETA 183 Query: 154 GLPLSVFEKVLPQTRLDVILSYCHYSL--NDTTXXXXXXXXEKSGT----GLMNASPISM 207 + ++ YSL + + ++ Sbjct: 184 FGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTG 243 Query: 208 GLLSNRKVPDWHPAGAEIQAACQRAAEYCRDKGEDIAKLAVQFSTANEQIPTTLVSTATP 267 L+ K + + + + + + Sbjct: 244 KYLNGAKP-AGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFV 302 Query: 268 ANIRNNIKWTEEPMDEQLLTEVR 290 A+ ++ + Sbjct: 303 ASTLLGATTMDQLKTNIESLHLE 325 >BS_yqkF [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 13/218 (5%), Positives = 37/218 (16%), Gaps = 16/218 (7%) Query: 1 MKYRKLGNTGLEXXXXXXXXXXXXXXXREVPRDEAILTVHTAIDLGINLIDVSPYYGLMK 60 M+Y ++ ++ LE EA + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFG-----EQNSEADAHAQLDYAVAQGINLIDVAEMYPV 55 Query: 61 AETVLGEALQTVPRDKYILSTKAG-RYGEGE----FDFSRERIIRSAEESMGRLGTDYLD 115 + L L+ ++++ R Sbjct: 56 PPRPETQGLTE-TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREAL 114 Query: 116 ILLLHDVEFGPVEQVMEEGIPALEELKQAGKIRYYGVSGLPLSVFEKVLPQTRLDVILSY 175 L + + + + Y + +V + Sbjct: 115 HDSLKR---LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQR-- 169 Query: 176 CHYSLNDTTXXXXXXXXEKSGTGLMNASPISMGLLSNR 213 + + + N Sbjct: 170 AGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNP 207 >BH1011 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 13/245 (5%), Positives = 42/245 (17%), Gaps = 18/245 (7%) Query: 42 AIDLGINLIDVSPYYGLMKAETVLGEALQTVPRDKYILSTKAG-RYGEGE----FDFSRE 96 + + + + L L+ Sbjct: 37 DYAVAQGINLIDVAEMYPVPPRPETQGLTETYVG-NWLAKHGSREKLIIASKVSGPSRNN 95 Query: 97 RIIRSAEESMGRLGTDYLDILLLHDVEFGPVEQVMEEGIPALEELKQAGKIRYYGVSGLP 156 ++++ R L + + + + Y + Sbjct: 96 DKGIRPDQALDRKNIREALHDSLKR---LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSA 152 Query: 157 LSVFEKVLPQTRLDVILSYCHYSLNDTTXXXXXXXXEKSGTGLMNASPISMGLLSNRKVP 216 +V + + + + N Sbjct: 153 PAVSLLDTLDALAEYQR--AGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSL 210 Query: 217 DWHPAGAEIQAACQRAAEYCRDK---GEDIAKLAVQFSTANEQIPTTLVSTATPANIRNN 273 + ++Y + + + N P +T R + Sbjct: 211 L----NRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYS 266 Query: 274 IKWTE 278 + T+ Sbjct: 267 GEQTQ 271 >SMb20500 [C] COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) Length = 346 Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 12/274 (4%), Positives = 37/274 (13%), Gaps = 44/274 (16%) Query: 34 EAILTVHTAIDLGINLIDVSPYYGLMKAETVLGEALQTVPRDKYILSTKAG-----RYGE 88 ++ + + P + V + ++ + Sbjct: 39 AVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLA-KHGSREKLIIASKVSGPSRNNDK 97 Query: 89 GEFD---------FSRERIIRSAEESMGRLGTDYLDILLLHDVE-FGPVEQVMEEGIPAL 138 G ++ + A Sbjct: 98 GIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS----AP 153 Query: 139 EELKQAGKIRYYGVSGLPLSVFEKVLPQTRLDVILSYCHYSLNDTTXXXXXX-XXEKSGT 197 + V +T V+ + + S Sbjct: 154 AVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRY--LHLADKHDLPRIVTIQNPYSLL 211 Query: 198 GLMNASPISMGLLSN--------------RKVPDWHPAGAEIQAACQRAAEYCRDKGED- 242 ++ + A + + Sbjct: 212 NRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPA---GARNTLFSRFTRYSGE 268 Query: 243 ---IAKLAVQFSTANEQIPTTLVSTATPANIRNN 273 A A + ++ A Sbjct: 269 QTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFV 302 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,133,145 Number of extensions: 987038 Number of successful extensions: 21071 Number of sequences better than 1.0e-05: 6292 Number of HSP's gapped: 20910 Number of HSP's successfully gapped: 6292 Length of query: 319 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 213 Effective length of database: 26,153,027 Effective search space: 5570594751 Effective search space used: 5570594751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 116 (49.3 bits)