BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0103.p
         (95 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ptsH [G] COG1925 Phosphotransferase system, HPr-related proteins    76   1e-14
BH3074 [G] COG1925 Phosphotransferase system, HPr-related proteins     73   1e-13
BH3566 [G] COG1925 Phosphotransferase system, HPr-related proteins     57   6e-09
BS_crh [G] COG1925 Phosphotransferase system, HPr-related proteins     50   6e-07
CAC1820 [G] COG1925 Phosphotransferase system, HPr-related proteins    50   8e-07

>BS_ptsH [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 85

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 0/89 (0%), Positives = 0/89 (0%), Gaps = 1/89 (1%)

Query: 4  IMQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGD 63
          + Q+   I   +G+H RPA   V  A  F    +   + GK  + KS+  + +LGL  G 
Sbjct: 1  MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITV-TSNGKSASAKSLFKLQTLGLTQGT 59

Query: 64 TLTLITEGXXXXXXXXXXQEVMVKEGLGE 92
                                       
Sbjct: 60                               88


>BH3074 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 87

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 56/89 (62%), Gaps = 2/89 (2%)

Query: 4  IMQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGD 63
          + +KTF I  E GIHARPAT LVN A ++  +E   E KGK V LKSI+GV+SLG+  G 
Sbjct: 1  MAEKTFTITAETGIHARPATQLVNKAGQYS-SEITLEYKGKAVNLKSIMGVMSLGVGKGA 59

Query: 64 TLTLITEGXXXXXXXXXXQEVMVKEGLGE 92
           +T+  EG          +EV +KEGLGE
Sbjct: 60 QVTIKAEGSDEAEALKGIEEV-IKEGLGE 87


>BH3566 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 84

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 1/56 (1%)

Query: 16 GIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGDTLTLITEG 71
          G+ ARPA   V  A +F  +E F E  GKKV  KSI+G++SL + +G T+TLITEG
Sbjct: 13 GLQARPAALFVQEANRFT-SEIFIEKDGKKVNAKSIMGLMSLAIGSGSTITLITEG 67


>BS_crh [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 85

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)

Query: 4  IMQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGD 63
          ++Q+   +  + G+ ARPA   V  A +F  ++ F E  GKKV  KSI+G++SL +  G 
Sbjct: 1  MVQQKVEVRLKTGLQARPAALFVQEANRFT-SDVFLEKDGKKVNAKSIMGLMSLAVSTGT 59

Query: 64 TLTLITEG 71
           +TLI +G
Sbjct: 60 EVTLIAQG 67


>CAC1820 [G] COG1925 Phosphotransferase system, HPr-related proteins
          Length = 86

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 4  IMQKTFRIIDEDGIHARPATALVNTATKFKGTESFAEAKGKKVTLKSILGVLSLGLEAGD 63
          ++ K+  +    G+HARPAT LV  A+ FK ++   E  GKK   KS++GVLSLG+    
Sbjct: 1  MVTKSVVVKSSTGLHARPATLLVKKASGFK-SDVTMEFNGKKANAKSLIGVLSLGVSKDS 59

Query: 64 TLTLITEG 71
           + LI  G
Sbjct: 60 NIKLIVSG 67


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.134    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,645,352
Number of extensions: 193232
Number of successful extensions: 310
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 7
Length of query: 95
Length of database: 38,378,431
Length adjustment: 64
Effective length of query: 31
Effective length of database: 30,997,055
Effective search space: 960908705
Effective search space used: 960908705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)