BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0097.p (815 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_pheT_1 [R] COG0073 EMAP domain 170 8e-42 BH3110_1 [R] COG0073 EMAP domain 167 5e-41 SA0986_1 [R] COG0073 EMAP domain 160 7e-39 lin1185_1 [R] COG0073 EMAP domain 160 8e-39 RSc1582_1 [R] COG0073 EMAP domain 135 3e-31 >BS_pheT_1 [R] COG0073 EMAP domain Length = 153 Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 85/153 (55%), Positives = 110/153 (71%), Gaps = 1/153 (0%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL DY+ L+G+ A LA++IT AGIE++G+E + +G+ G+V+G+V +E+HP+A Sbjct: 1 MFVSYKWLEDYVDLKGMDPAVLAEKITRAGIEVEGIEYKGEGIKGVVIGHVLEREQHPNA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKLN C+VD G +QI+CGA NV GQKV VA VGA LPG +IKKAKLRG S GMI Sbjct: 61 DKLNKCLVDIGAEAPVQIICGAPNVDKGQKVAVATVGAVLPGNFKIKKAKLRGEESNGMI 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQD 152 CS +ELG+ KL+ KE EGI V P + E G D Sbjct: 121 CSLQELGIESKLVAKEYAEGIFVFPNDAETGSD 153 >BH3110_1 [R] COG0073 EMAP domain Length = 151 Score = 167 bits (424), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 112/151 (74%), Gaps = 1/151 (0%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS WL Y+ L+G++A E+A+++T GIE+D + N+G +G+VVG+V +HP+A Sbjct: 1 MLVSYQWLKQYVDLDGISAEEVAEKLTRGGIEVDIIHDLNQGATGVVVGHVLECRQHPNA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLPG-LEIKKAKLRGVLSQGMI 119 DKLN+C V+ G+ E +QIVCGA NVAAGQKV VA VGA LPG +IKKAKLRG LSQGMI Sbjct: 61 DKLNLCQVEIGEEEPVQIVCGAPNVAAGQKVAVAKVGAVLPGNFKIKKAKLRGELSQGMI 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIG 150 CS +ELG+ +K + KE +GI V ++ EIG Sbjct: 121 CSLQELGVENKFVQKEFADGIYVFSDDVEIG 151 >SA0986_1 [R] COG0073 EMAP domain Length = 158 Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 2/158 (1%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M +S WL +Y++++ + ++LA+RIT GIE+D + K + +VVG+VKSKEKHPDA Sbjct: 1 MLISNEWLKEYVTIDD-SVSDLAERITRTGIEVDDLIDYTKDIKNLVVGFVKSKEKHPDA 59 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLP-GLEIKKAKLRGVLSQGMI 119 DKLNVC VD G+ E +QIVCGA NV AGQ V VA VG +LP G++IK+AKLRG S+GMI Sbjct: 60 DKLNVCQVDIGEDEPVQIVCGAPNVDAGQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMI 119 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVL 157 CS +E+G++ +PK + GI V E+ G D L+ L Sbjct: 120 CSLQEIGISSNYIPKSFESGIYVFSESQVPGTDALQAL 157 >lin1185_1 [R] COG0073 EMAP domain Length = 159 Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M VS +W+ ++ +TA EL + IT GIEI+GVE + L +VVG V S E+HPDA Sbjct: 1 MLVSYNWVKEFFQDFPLTAEELGEAITRTGIEIEGVEELSASLKNVVVGEVLSCERHPDA 60 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLP-GLEIKKAKLRGVLSQGMI 119 +KLN C+V + E +QI+CGA NVAAGQKV VA VGA+LP GL+IK+AKLRG +S+GMI Sbjct: 61 EKLNKCLVQTDEEEPVQIICGAPNVAAGQKVIVAKVGARLPGGLKIKRAKLRGEVSEGMI 120 Query: 120 CSAKELGLNDKLLPKELQEGILVLPENTEIGQDILKVLG 158 CS ELG K++PK +GI VLPE+ E G + +LG Sbjct: 121 CSLAELGFESKVVPKAYADGIYVLPEHVETGVSAITLLG 159 >RSc1582_1 [R] COG0073 EMAP domain Length = 144 Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 76/151 (50%), Positives = 99/151 (65%), Gaps = 13/151 (8%) Query: 1 MKVSTSWLADYISLEGVTAAELADRITTAGIEIDGVERRNKGLSGIVVGYVKSKEKHPDA 60 M+ SWL +++ + AEL+ R+T AG+E++ V+ S IVVG+V KHPDA Sbjct: 1 MQFPESWLRSFVN-PPIATAELSHRLTMAGLEVEEVDPVAPPFSQIVVGHVVEVNKHPDA 59 Query: 61 DKLNVCIVDAGQGEDLQIVCGAKNVAAGQKVPVALVGAKLP------GLEIKKAKLRGVL 114 D+LNVC VDAG GE LQIVCGA NV+ G KVP ALVGA+LP +IK KLRGV Sbjct: 60 DRLNVCKVDAGTGELLQIVCGAPNVSVGIKVPCALVGAELPPGDDGKPFKIKIGKLRGVE 119 Query: 115 SQGMICSAKELGLNDKLLPKELQEGILVLPE 145 S GM+CSA+EL L+++ G+L+LPE Sbjct: 120 SYGMLCSARELKLSEE------HGGLLILPE 144 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 60,497,362 Number of extensions: 2715571 Number of successful extensions: 11339 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 11280 Number of HSP's successfully gapped: 49 Length of query: 815 Length of database: 38,378,431 Length adjustment: 115 Effective length of query: 700 Effective length of database: 25,115,021 Effective search space: 17580514700 Effective search space used: 17580514700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)