BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0078.p
         (142 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L110960 [K] COG1846 Transcriptional regulators                        125   1e-29
SA0322 [K] COG1846 Transcriptional regulators                          79   3e-15
MTH313 [K] COG1846 Transcriptional regulators                          52   3e-07
CAC0197 [K] COG1846 Transcriptional regulators                         52   3e-07
Cgl0285 [K] COG1846 Transcriptional regulators                         51   7e-07

>L110960 [K] COG1846 Transcriptional regulators
          Length = 139

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 91/119 (76%)

Query: 24  ADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARGASITSILQGLEKKGYIER 83
           + + +++L +N QQ ++I YI ++Q+KG+IQ+DL++ F+ RGASITS+LQGLEKKGYIER
Sbjct: 21  SSQMMKDLEVNHQQARVIAYIAENQDKGLIQKDLAEVFNRRGASITSMLQGLEKKGYIER 80

Query: 84  KIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSSDEQKLLKEMLVKINQHF 142
           +IP  NERQKNIY+LPKG+++I +  + F+  E ++++PL+  EQ     +L KI+ + 
Sbjct: 81  RIPKENERQKNIYILPKGLKIINQINQIFEASEKKLIEPLTEKEQAEFLRLLEKIDDNL 139


>SA0322 [K] COG1846 Transcriptional regulators
          Length = 139

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 71/118 (60%)

Query: 21  KRRADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARGASITSILQGLEKKGY 80
           K++AD+ + +  +  +QG  + Y++ HQ+ G+ Q D++      G +++++L+ LE+K  
Sbjct: 17  KQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKL 76

Query: 81  IERKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSSDEQKLLKEMLVKI 138
           I R + A + R+KNI +   G++L+E F   F ++E  +V  LS +E + +K  L K+
Sbjct: 77  IYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKM 134


>MTH313 [K] COG1846 Transcriptional regulators
          Length = 254

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 7/113 (6%), Positives = 22/113 (19%), Gaps = 1/113 (0%)

Query: 29  RELG-LNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARGASITSILQGLEKKGYIERKIPA 87
            E      ++  +     + Q  G               +   +      K         
Sbjct: 24  EEFRPDVIKRAVLSAQTARVQPWGPDPMAGKRTSAQSYGAGRGVAMVPRIKNGSRAAFVP 83

Query: 88  HNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSSDEQKLLKEMLVKINQ 140
                +  +         E   R  +++        ++ +  +        N 
Sbjct: 84  QAVGGRRAHPPRPQKNYHERINRKERRLAIRSAVAATARKDLVEARGHRIENV 136


>CAC0197 [K] COG1846 Transcriptional regulators
          Length = 140

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 2/96 (2%)

Query: 33  LNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARGASITSILQGLEKKGYIERKIPAHNERQ 92
           L   Q K+++Y+  H   G +Q+D++       +++TS+L  +EK G IER++   N R 
Sbjct: 29  LTHGQPKVLDYLKYHD--GCVQKDIAAACEIESSTVTSLLLRMEKSGLIERRMLNGNRRS 86

Query: 93  KNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSSDEQ 128
             +++  KG E +E+    F ++E       S DE+
Sbjct: 87  LYVFLTEKGKEALEKVTSVFDELEKIAFDGFSEDEK 122


>Cgl0285 [K] COG1846 Transcriptional regulators
          Length = 171

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 2/116 (1%)

Query: 23  RADESIRELGLNAQQGKMIEYIHKHQEKGVIQRDLSDRFHARGASITSILQGLEKKGYIE 82
           + +E++ +LGL  +Q   +       +    QR+L        + I +++  LEK+G + 
Sbjct: 56  KGNEALVDLGLKVRQYSTLSLAASGLKP--TQRELGAFLDLDPSQIVALVDFLEKRGLVA 113

Query: 83  RKIPAHNERQKNIYVLPKGVELIEEFKRSFQQVEAEIVQPLSSDEQKLLKEMLVKI 138
           R++   + R K I    KG+E+ +E  +     E E ++ L+SDEQ+ L+E+L+KI
Sbjct: 114 REVDPRDRRSKIIIATEKGLEIHDEATKRLLIAEGESLKNLTSDEQEQLRELLLKI 169


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,058,147
Number of extensions: 347080
Number of successful extensions: 943
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 948
Number of HSP's successfully gapped: 7
Length of query: 142
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 46
Effective length of database: 27,306,367
Effective search space: 1256092882
Effective search space used: 1256092882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)