BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0073.p
         (192 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin1172 [S] COG2096 Uncharacterized conserved protein                 169   3e-42
SSO0588 [S] COG2096 Uncharacterized conserved protein                 108   7e-24
SSO0377 [S] COG2096 Uncharacterized conserved protein                  98   9e-21
lin1128_1 [S] COG2096 Uncharacterized conserved protein                97   2e-20

>lin1172 [S] COG2096 Uncharacterized conserved protein
          Length = 188

 Score =  169 bits (427), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 7/192 (3%)

Query: 1   MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60
           M IYT+TGDKG T +IGG        KD++R+ AYGT+DELNS +G   + + +    ++
Sbjct: 1   MRIYTKTGDKGMTRIIGGSKVS----KDNIRINAYGTLDELNSLIGYTITTLGNE--PEI 54

Query: 61  REQLLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGG 120
           + +L +IQ +LFD G DLA  +  +  YK+ +     LE  ID    E P +E+FILPGG
Sbjct: 55  QAELEQIQQQLFDAGGDLA-TEEGKRDYKLTAEPVAWLEDRIDIYADEPPEIEKFILPGG 113

Query: 121 SQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIAD 180
           +Q +S+LH+ RTV RRAER  V + + A  NQE + Y+NRLSDYFFA+AR  N R G  D
Sbjct: 114 TQAASLLHMARTVARRAEREIVGMLKIASTNQEVLKYVNRLSDYFFAVARVVNYRAGETD 173

Query: 181 VEYVRSKKVFRN 192
           + Y  S+ VFRN
Sbjct: 174 IFYKNSELVFRN 185


>SSO0588 [S] COG2096 Uncharacterized conserved protein
          Length = 174

 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 63/181 (34%), Positives = 100/181 (55%), Gaps = 13/181 (7%)

Query: 3   IYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADVRE 62
           ++TRTGD G T+VI          KD   V   G IDELNSF+G A + +E   + D++ 
Sbjct: 1   MFTRTGDDGNTNVIS-----KRVGKDSPVVNLLGDIDELNSFIGLALTKIE---WEDMQS 52

Query: 63  QLLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGGSQ 122
            L+ +Q ELF  G ++      ++K ++     + LE      + E+  ++ F++PGGS+
Sbjct: 53  DLMRVQTELFILGEEII-----QDKGRINEETIKWLESRTVEYRKESGPVKLFVIPGGSE 107

Query: 123 LSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIADVE 182
            +S LHV R++ RR ER AV   +  + N+  ++YLNRLS   F++A  AN R  + +  
Sbjct: 108 QASYLHVVRSIARRVERNAVAYSKELNFNKWIIVYLNRLSSLLFSMAIVANKRKNVKERI 167

Query: 183 Y 183
           Y
Sbjct: 168 Y 168


>SSO0377 [S] COG2096 Uncharacterized conserved protein
          Length = 172

 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 14/182 (7%)

Query: 4   YTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADVREQ 63
           YT TGDKG+T +           KDD  V A G +DELN+ +G   SL     +  +RE 
Sbjct: 5   YTGTGDKGKTKL----PSVGEIWKDDDIVNAIGDLDELNASLGVISSL-----YPQLREI 55

Query: 64  LLEIQHELFDCGSDLAFVKLSENKYKVKSGMAERLEGWIDALQAENPVLERFILPGGSQL 123
           ++ IQ ++F   S++A   ++  + KVK      +E  I +     P L  FILPGG   
Sbjct: 56  MVRIQSDIFSLSSEIAGFDMNFEEEKVK-----WIEEEISSFSKGIPELRNFILPGGHVA 110

Query: 124 SSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARAANTRLGIADVEY 183
           +S LH+ RT+CRR+ER  V + + +      V YLNRLS   F LA   N +  + ++ +
Sbjct: 111 ASFLHLARTICRRSERSVVKILKRSKAKDVHVKYLNRLSSLLFVLALYVNKQEKVQEIIW 170

Query: 184 VR 185
            R
Sbjct: 171 KR 172


>lin1128_1 [S] COG2096 Uncharacterized conserved protein
          Length = 190

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/184 (34%), Positives = 95/184 (51%), Gaps = 23/184 (12%)

Query: 1   MAIYTRTGDKGETSVIGGXXXXXXXXKDDVRVEAYGTIDELNSFVGQARSLMEDAKFADV 60
           M+IYT+TGDKG T++  G        K D RVE YG+ DELN+ +  A       KF   
Sbjct: 1   MSIYTKTGDKGTTALFDGNRVK----KYDDRVETYGSFDELNAEISVAE------KFVTS 50

Query: 61  REQ---LLEIQHELFDCGSDLAFVKLSENKYKVKSGMA------ERLEGWIDALQAENPV 111
            E    L  ++ +LF   ++LA    +E++  + S +         LE  IDA   + P 
Sbjct: 51  HENKTLLRNVERQLFYVCAELA----TEDESALASKIVITEDDINELEKVIDAYTLKLPK 106

Query: 112 LERFILPGGSQLSSVLHVCRTVCRRAERRAVTLGRSADINQEAVIYLNRLSDYFFALARA 171
           ++ F+LPG S+  + LH  RT+ RRAER  V       +  E + ++NRLSD+ + LAR 
Sbjct: 107 VDSFVLPGSSKAGAFLHSARTIARRAERLLVRFSEQTAVRNELLKFVNRLSDFLYILARE 166

Query: 172 ANTR 175
            + R
Sbjct: 167 EDFR 170


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,343,348
Number of extensions: 451906
Number of successful extensions: 736
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 726
Number of HSP's successfully gapped: 4
Length of query: 192
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 91
Effective length of database: 26,729,697
Effective search space: 2432402427
Effective search space used: 2432402427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)