BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0065.p (292 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1715 [G] COG1175 ABC-type sugar transport systems, permease c... 189 6e-48 BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease... 182 4e-46 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 180 3e-45 AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport... 174 1e-43 AGpA786 [R] COG0431 Predicted flavoprotein 174 1e-43 >mll1715 [G] COG1175 ABC-type sugar transport systems, permease components Length = 307 Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 149/244 (61%), Gaps = 1/244 (0%) Query: 50 FTGLANYRTMFQDEVFRKVMSNNVLFALGTVPLGIALALLMAVFANKALRGRGFMRSAFF 109 F G NY + D FR+ + N ++ P+ I L L +A+ R RGF R+ +F Sbjct: 64 FVGFENYAHLLNDRTFRRSLWNTSVYTAIVAPVSIVLGLGVALLIEGEGRARGFFRTVYF 123 Query: 110 YPTLIPMIAVANIWLFIYTPEYGFMSRLLSWFGVNDINWLGTPGLVMWAMILMIIWKEAG 169 P ++A+A +W +I+ P G ++ LLS G+ NWLG V++++ ++ IW+ G Sbjct: 124 LPVASLIVAMATVWQYIFHPTIGPLNALLSLAGIPGPNWLGASNTVLYSLSIIGIWQSVG 183 Query: 170 FFMIFYLAGLQNISKELYEAAHVDGV-GRFTVFRKITFPLLMPTTLFVSIVALTNAYKLV 228 F M+ +LAGL I +ELY AAHVDG F +T+P+L PTTLFV +++TNA K+ Sbjct: 184 FNMVLFLAGLTAIPRELYAAAHVDGAKSALDRFFLVTWPMLGPTTLFVVTISITNAVKVF 243 Query: 229 DHLMIMTRGGPNNASNLLLYYIYETAFSYWDQGMASALTVVMIAVLLLIAAVQFFGLDRR 288 + + ++T GGPN AS +LL+ IY+ F Y G ASA+TVV +A+L+++ VQ+ +DRR Sbjct: 244 ETVKMLTDGGPNKASEVLLFTIYQEGFVYLRVGYASAMTVVFLAILVVLMLVQYRVIDRR 303 Query: 289 IHYN 292 +HY Sbjct: 304 VHYT 307 >BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease components Length = 270 Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 100/264 (37%), Positives = 154/264 (58%), Gaps = 1/264 (0%) Query: 29 PIALTLRLSLFQADLSTPEPVFTGLANYRTMFQDEVFRKVMSNNVLFALGTVPLGIALAL 88 P A + SL +L F GL NY +F D F + N ++ P + L L Sbjct: 7 PTAAVIFWSLTNFELGYDGFEFIGLENYAELFSDRTFLISLKNTAVYTAIVAPASVFLGL 66 Query: 89 LMAVFANKALRGRGFMRSAFFYPTLIPMIAVANIWLFIYTPEYGFMSRLLSWFGVNDINW 148 +A+ +RG+ F R+ +F P ++A+A +W ++ P G ++ +L G+ NW Sbjct: 67 GVALLIEGEVRGKSFFRTVYFLPVASLLVAMATVWQYLLHPTLGPVNAMLGMIGIAGPNW 126 Query: 149 LGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQNISKELYEAAHVDGV-GRFTVFRKITFP 207 LG+ V++++ L+ IW+ GF M+ +LAGL I +ELY AA VDGV + FR +T+P Sbjct: 127 LGSSETVLFSLALIGIWQSVGFNMVLFLAGLTAIPRELYSAAEVDGVKNSWERFRLVTWP 186 Query: 208 LLMPTTLFVSIVALTNAYKLVDHLMIMTRGGPNNASNLLLYYIYETAFSYWDQGMASALT 267 LL TTLFV+ +++ NA K+ + + +T GGPN AS +LL+ IY+ F Y G ASA+T Sbjct: 187 LLGATTLFVTTISIINAVKVFETVKTLTEGGPNKASEVLLWTIYQEGFVYLRVGYASAMT 246 Query: 268 VVMIAVLLLIAAVQFFGLDRRIHY 291 V+ +AVL+++ +QF LDRR HY Sbjct: 247 VIFLAVLVILMLLQFRVLDRRTHY 270 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 96/240 (40%), Positives = 143/240 (59%), Gaps = 3/240 (1%) Query: 29 PIALTLRLSLFQADL-STPEPVFTGLANYRTMFQDEVFRKVMSNNVLFALGTVPLGIALA 87 PI +L +S DL ST FTG NY+ +F D F K N + F +G +P + L Sbjct: 31 PILGSLGISFTDWDLVSTIH--FTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILG 88 Query: 88 LLMAVFANKALRGRGFMRSAFFYPTLIPMIAVANIWLFIYTPEYGFMSRLLSWFGVNDIN 147 L A+ N+ ++ R F R+ +F P + +AV+ +W +++ P YG ++ LS G+ N Sbjct: 89 LACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPN 148 Query: 148 WLGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQNISKELYEAAHVDGVGRFTVFRKITFP 207 WL P M A+I+ WK+ GF M+ +L GLQNIS YEAA++DG + IT P Sbjct: 149 WLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIP 208 Query: 208 LLMPTTLFVSIVALTNAYKLVDHLMIMTRGGPNNASNLLLYYIYETAFSYWDQGMASALT 267 LL PTT FV+I++L N++++ D +MIMT GGP+ A+ L+ IY AF Y++ G ASA++ Sbjct: 209 LLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMS 268 >AGpA781 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 15/264 (5%), Positives = 37/264 (14%) Query: 29 PIALTLRLSLFQADLSTPEPVFTGLANYRTMFQDEVFRKVMSNNVLFALGTVPLGIALAL 88 A+ +++ + R Sbjct: 59 IPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEIDAIYNPLPNHLH 118 Query: 89 LMAVFANKALRGRGFMRSAFFYPTLIPMIAVANIWLFIYTPEYGFMSRLLSWFGVNDINW 148 + FM R + Sbjct: 119 VPMTIKALEQGKPVLCEKPIALDAAQARELATAQKAASLPVAEAFMVRHHPQWKKAHALI 178 Query: 149 LGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQNISKELYEAAHVDGVGRFTVFRKITFPL 208 + A+ + + + + ++ + Sbjct: 179 TEGRLGEVRAIQTIFSYYLDDPGNVRNQVDIGGGGLFDVGCYAINTARFLFDAEPLRAIA 238 Query: 209 LMPTTLFVSIVALTNAYKLVDHLMIMTRGGPNNASNLLLYYIYETAFSYWDQGMASALTV 268 LM LT+ + S + T +A Sbjct: 239 LMERDPVFGTDRLTSGLLAFPEGKQLAFTCSTQLSLTQKVTVLGTRGRLEIPIPFNAPAD 298 Query: 269 VMIAVLLLIAAVQFFGLDRRIHYN 292 ++ G I Sbjct: 299 EPTVLIFDDGRDLAGGGREEIMIG 322 >AGpA786 [R] COG0431 Predicted flavoprotein Length = 323 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 157/264 (59%) Query: 29 PIALTLRLSLFQADLSTPEPVFTGLANYRTMFQDEVFRKVMSNNVLFALGTVPLGIALAL 88 PI +L LS + + +P F G NY + + LFA+ +VPL + LAL Sbjct: 59 PILASLNLSFREWNFLSPNMPFVGFRNYEQLLASRDLWNSLWVTTLFAVLSVPLRLGLAL 118 Query: 89 LMAVFANKALRGRGFMRSAFFYPTLIPMIAVANIWLFIYTPEYGFMSRLLSWFGVNDINW 148 ++A + + +R A F P++ +++A ++ ++++ +YG + LL FG+ + W Sbjct: 119 VIAAYLVRESVHVRLLRGALFLPSVTSTVSIAVVFSWVFSTDYGMANALLGTFGLGKVQW 178 Query: 149 LGTPGLVMWAMILMIIWKEAGFFMIFYLAGLQNISKELYEAAHVDGVGRFTVFRKITFPL 208 L P L +W +I + WK+ G+ ++ Y+AGLQ I +ELY+AA VDG R VFR+IT PL Sbjct: 179 LQNPHLALWVLIFVNTWKQIGYDIVIYIAGLQAIPRELYDAAAVDGGKRLHVFRRITMPL 238 Query: 209 LMPTTLFVSIVALTNAYKLVDHLMIMTRGGPNNASNLLLYYIYETAFSYWDQGMASALTV 268 +MPTT F+ ++++ A+++ + +MT+GGP A+++L+ +YE F +D G SAL V Sbjct: 239 VMPTTYFLLVISVIEAFQVFTIVNVMTKGGPAGATDMLVSLLYEIGFVLFDIGRGSALAV 298 Query: 269 VMIAVLLLIAAVQFFGLDRRIHYN 292 ++ +L+ +A ++ + R++HY Sbjct: 299 LLFILLVGLAILKSRIIGRKVHYE 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.142 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,270,988 Number of extensions: 754325 Number of successful extensions: 2557 Number of sequences better than 1.0e-05: 175 Number of HSP's gapped: 2416 Number of HSP's successfully gapped: 176 Length of query: 292 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 187 Effective length of database: 26,268,361 Effective search space: 4912183507 Effective search space used: 4912183507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)