BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0055.p (306 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value alr3946 [P] COG1122 ABC-type cobalt transport system, ATPase com... 229 4e-60 MA3551 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 202 8e-52 MJ1088 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 199 6e-51 MA0394 [P] COG1122 ABC-type cobalt transport system, ATPase comp... 192 8e-49 NMA0394 [LR] COG0494 NTP pyrophosphohydrolases including oxidati... 192 8e-49 >alr3946 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 359 Score = 229 bits (584), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 13/229 (5%), Positives = 41/229 (17%) Query: 27 LAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVR 86 + + L + + A TL + +R Sbjct: 6 VVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLETARTLPDADAFGVARLEEALR 65 Query: 87 QAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAA 146 ++ L L + E ++ + + + Sbjct: 66 LRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDT 125 Query: 147 VLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGL 206 + L + + + + K +++ + +G Sbjct: 126 GMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGK 185 Query: 207 DSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 + + + II+ Sbjct: 186 PGQRSIAASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPV 234 >MA3551 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 453 Score = 202 bits (513), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 107/267 (40%), Positives = 154/267 (57%), Gaps = 4/267 (1%) Query: 34 FHYPD-TVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVRQAGLPV 92 + YPD TV AL+G+ I +G K A +G NGSGKSTLFL G L+PQ G + G P Sbjct: 11 YTYPDGTV--ALQGINIEIKKGKKIAFVGQNGSGKSTLFLLLNGTLKPQEGEILFHGSPF 68 Query: 93 SYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAAVLELLN 152 Y K L +R+ VG+VFQ+ + Q+ T +D++FG G + I A LE + Sbjct: 69 KYDSKSLREIRKSVGIVFQNSDDQIFAPTVYQDVAFGPANLGYSKERIDASVQHALEHVG 128 Query: 153 LTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGLDSIHRK 212 LT LKDKP H LS GQKKR A+AGV+AMEPE+I+LDEP S LDP+ +++D L+ + Sbjct: 129 LTRLKDKPPHHLSGGQKKRVAIAGVMAMEPEVIILDEPLSNLDPVGADEIMDLLNEFNHF 188 Query: 213 GTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGEXXXXXXXXXXXXXELWH 272 G+T++++THD++LAYRW+D++ ++ G P +F E E++H Sbjct: 189 GSTIIISTHDVDLAYRWSDYVYLMSNSKLIGQGTPAEVFKEQELLKKAGLRQPTTLEIYH 248 Query: 273 SLPPR-VTAGHAAPRNAEEFKAALSSL 298 + R + G +P+ E L L Sbjct: 249 EIERRGLAYGKNSPKTIPELVNTLKPL 275 >MJ1088 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 279 Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 148/231 (64%), Gaps = 1/231 (0%) Query: 25 YSLAFEDVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGT 84 Y + +D+ F YPD L+G+ + +G +LLG NG+GKSTLFLH G+LRP G Sbjct: 2 YIVETKDLYFRYPDGTA-VLKGINFKVKKGEMVSLLGPNGAGKSTLFLHFNGILRPTKGE 60 Query: 85 VRQAGLPVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARC 144 V G P+ Y KK L +R+ VGLVFQ+P+ Q+ T ED++FG G+P+ E+ R Sbjct: 61 VLIKGKPIKYDKKSLVEVRKTVGLVFQNPDDQIFAPTVKEDVAFGPLNLGLPKEEVEKRV 120 Query: 145 AAVLELLNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLD 204 L+ + + ++KP H LS GQKKR A+AG++AM+PE+I+LDEPT+ LDP+ ++++ Sbjct: 121 KEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMQPEVIVLDEPTAGLDPVGASKIMK 180 Query: 205 GLDSIHRKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIFAGGE 255 L +++KG T++++THD++L +AD + V+ G G P+ +F+ E Sbjct: 181 LLYDLNKKGMTIIISTHDVDLVPVYADKVYVMYDGKILKEGTPKEVFSDVE 231 >MA0394 [P] COG1122 ABC-type cobalt transport system, ATPase component Length = 444 Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 141/221 (63%), Gaps = 1/221 (0%) Query: 31 DVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVRQAGL 90 D+ + YPD A+ ++ +I +G K AL+G NGSGKSTLFL G L+PQ G + G Sbjct: 11 DLKYTYPDGT-LAIEDVSISIEKGKKIALVGPNGSGKSTLFLLLNGTLKPQEGEIIFHGK 69 Query: 91 PVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAAVLEL 150 P+ Y K L +R+ VG+VFQ+ + Q+ T +D++FG MPE E+ A+ LE Sbjct: 70 PLLYEKASLRDVRKSVGIVFQNSDDQIFAPTVYQDVAFGPINLEMPEEEVAAKVNETLEY 129 Query: 151 LNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGLDSIH 210 + L LKDKP H LS GQKK+ A+AGV+ MEPE+I+LDEP + LDP+ ++LD L+ ++ Sbjct: 130 VGLLELKDKPPHHLSGGQKKKVAIAGVVVMEPEVIILDEPLTSLDPVGADEILDLLNELN 189 Query: 211 RKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIF 251 + +V++THD++ AY WAD+I +L +G PE IF Sbjct: 190 QFEKAIVISTHDIDFAYSWADYIYLLVNRKIIGSGTPEEIF 230 >NMA0394 [LR] COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes Length = 673 Score = 192 bits (487), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 17/221 (7%), Positives = 43/221 (19%), Gaps = 1/221 (0%) Query: 31 DVVFHYPDTVEPALRGLTAAIPRGCKTALLGHNGSGKSTLFLHAVGLLRPQTGTVRQAGL 90 P V A G K A L ++ + + G Sbjct: 11 VEFVTGPCLV-LAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 Query: 91 PVSYAKKELAALRRRVGLVFQDPEQQLILSTPLEDISFGLRGTGMPEAEITARCAAVLEL 150 + + + L +++ + S + + + Sbjct: 70 TLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDK 129 Query: 151 LNLTALKDKPIHQLSLGQKKRTALAGVIAMEPELILLDEPTSYLDPLSEAQLLDGLDSIH 210 + L L + + + A A I + + L + Sbjct: 130 VLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILL 189 Query: 211 RKGTTVVMATHDMNLAYRWADWIIVLDQGVCRAAGAPEAIF 251 + ++ Q + + Sbjct: 190 PTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLL 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,083,750 Number of extensions: 914667 Number of successful extensions: 7740 Number of sequences better than 1.0e-05: 2092 Number of HSP's gapped: 4783 Number of HSP's successfully gapped: 2251 Length of query: 306 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 200 Effective length of database: 26,153,027 Effective search space: 5230605400 Effective search space used: 5230605400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)