BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0032.p
         (306 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl2775 [O] COG0330 Membrane protease subunits, stomatin/prohibi...   255   5e-68
SP2132 [O] COG0330 Membrane protease subunits, stomatin/prohibit...   225   8e-59

>Cgl2775 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs
          Length = 325

 Score =  255 bits (652), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 129/286 (45%), Positives = 198/286 (69%), Gaps = 15/286 (5%)

Query: 36  SGFLVIALIAICVAGGIYGA---------------VYDYAAVPVILFVLAGVLCTSITVV 80
           + F ++A+I + +A G++ A               V    A  V+  V   V  TS+ VV
Sbjct: 39  AAFALLAMIVLMIASGVFFAQSINTLENDGGGTLAVTGLIASIVVFTVALVVTITSVKVV 98

Query: 81  QPNKSVVVTFFGKYVGTIVNSGLFAVIPFSIRKTVSLRVRNFNSVKLKVNDVEGNPIEIA 140
            P  ++ V FFG+Y+GT+  +GL  V P S+ K VS+RVRNF + + KVND  GNPI IA
Sbjct: 99  SPGHTLTVQFFGRYIGTLRRTGLSFVPPLSVTKKVSVRVRNFETNEAKVNDYNGNPINIA 158

Query: 141 AVIVFKVVNSAKALFDVDKYMAFVEIQSETALRHVASRYPYDNFNESGMSLRANSDEIAK 200
           A+IV++V ++A+A F V+ +  F+  Q+E+ALRHVA+++PYD+  +  +SLR  +DE+++
Sbjct: 159 AIIVWQVADTAQASFSVEDFEEFLHQQAESALRHVATQHPYDSPVDGRVSLRGATDEVSE 218

Query: 201 ELAAELQERLSLSGVEVIEARLTHLAYSTEIASTMLQRQQASAILSARQIIVEGAVGMVD 260
           ELA E+ +R +++G+E++EAR++ L+Y+ EIA  MLQRQQASAI+ AR+ IVEGAV MV+
Sbjct: 219 ELADEVAQRAAVAGLEIVEARISSLSYAPEIAQAMLQRQQASAIVDAREKIVEGAVTMVE 278

Query: 261 MAIRQLKESGVVELDEERKAAMINNLMVAIVSERGASPVINAGSLY 306
            A+ QL++  +V+LD ER+AAM++NL+V + S+  A P++NAGSLY
Sbjct: 279 TALDQLEQREIVDLDPERRAAMVSNLLVVLCSDTNAQPIVNAGSLY 324


>SP2132 [O] COG0330 Membrane protease subunits, stomatin/prohibitin
           homologs
          Length = 335

 Score =  225 bits (573), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/289 (40%), Positives = 179/289 (61%), Gaps = 47/289 (16%)

Query: 65  ILFVLAGVLCTSITVVQPNKSVVVTFFGKYVGTIVNSGLFAVIPFSI------------- 111
           +L V+AG+    + VV+P +++V+T FG Y GTI   G + V PFS+             
Sbjct: 47  LLIVIAGLAHAGLKVVKPQEALVLTLFGNYTGTIKEPGFYFVNPFSVAVNPANHTRLGQS 106

Query: 112 -------------------------RKTVSLRVRNFNSVKLKVNDVEGNPIEIAAVIVFK 146
                                    +K +SL+V   ++ + K+ND  GNP+EI   + ++
Sbjct: 107 GDVSTKSPFLGAKSSNDNDVNLEIGKKQISLKVMTLSNSRQKINDCLGNPVEIGIAVTWR 166

Query: 147 VVNSAKALFDVDKYMAFVEIQSETALRHVASRYPYD---NFNESG------MSLRANSDE 197
           VV++AKA+F+VD Y  ++ +Q ++ALR++   YPYD   N + +G       SLR +S+ 
Sbjct: 167 VVDTAKAVFNVDNYKEYLSLQCDSALRNIVRIYPYDVSPNVDTTGDGQADEGSLRGSSEI 226

Query: 198 IAKELAAELQERLSLSGVEVIEARLTHLAYSTEIASTMLQRQQASAILSARQIIVEGAVG 257
           +A  +  E+Q R+  +G+E++EAR+T+LAY+ EIA+ MLQRQQASAI+ AR++IV+GAVG
Sbjct: 227 VANRIREEIQSRVEDAGLEILEARITYLAYAPEIAAVMLQRQQASAIIDARKMIVDGAVG 286

Query: 258 MVDMAIRQLKESGVVELDEERKAAMINNLMVAIVSERGASPVINAGSLY 306
           MV+MA+ +L E  +VELDEERKAAM++NL+V +     A P++N GSLY
Sbjct: 287 MVEMALERLNEGELVELDEERKAAMVSNLLVVLCGNHDAQPIVNTGSLY 335


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.136    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,532,426
Number of extensions: 715158
Number of successful extensions: 1954
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 1983
Number of HSP's successfully gapped: 16
Length of query: 306
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 200
Effective length of database: 26,153,027
Effective search space: 5230605400
Effective search space used: 5230605400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)