BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0029.p
         (265 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_yuiC [S] COG3584 Uncharacterized protein conserved in bacteria     155   6e-38
BH3404 [S] COG3584 Uncharacterized protein conserved in bacteria      150   1e-36
CAC2988_2 [S] COG3584 Uncharacterized protein conserved in bacteria   102   5e-22
BS_yabE_2 [S] COG3584 Uncharacterized protein conserved in bacteria    84   2e-16
BS_yocH_2 [S] COG3584 Uncharacterized protein conserved in bacteria    80   4e-15

>BS_yuiC [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 218

 Score =  155 bits (392), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/118 (63%), Positives = 91/118 (77%), Gaps = 2/118 (1%)

Query: 131 KVTATGYTAGYESTGKTAKHPEYGITYSGVKVRRDKNAVSTIAADPKVIPLGSVLYIPGY 190
           +VTATGYTAG ESTGK    P YG+TYSGVKV+RD    ST+AADP V P+G++L+IP Y
Sbjct: 87  RVTATGYTAGAESTGKNPGDPLYGLTYSGVKVKRD--LYSTVAADPSVFPIGTILFIPNY 144

Query: 191 GYAVVADTGSAIKGRKIDLYFSTTKQVYKEWGKKTVVVQLIKRGNGKCTENMLKSLGQ 248
           G  VVADTGSAIKG ++DLYF T K VY EWGKKT+ V +IK+G GK TE+ L+ L +
Sbjct: 145 GLGVVADTGSAIKGNRLDLYFETVKDVYNEWGKKTLDVYVIKKGTGKITEDELEKLNE 202


>BH3404 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 234

 Score =  150 bits (380), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 94/127 (74%), Gaps = 4/127 (3%)

Query: 129 SLKVTATGYTAGYESTGKTAKHPEYGITYSGVKVRRDKNAVSTIAADPKVIPLGSVLYIP 188
           S KV ATGYTAG ESTGK      YGIT+SGV+VRRD    STIAADP+V P+G+VL+IP
Sbjct: 104 SKKVVATGYTAGVESTGKRPGDASYGITFSGVEVRRD--LYSTIAADPRVFPIGTVLFIP 161

Query: 189 GYGYAVVADTGSAIKGRKIDLYFSTTKQVYKEWGKKTVVVQLIKRGNGKCTENMLKSL-- 246
           GYGY VV DTGSAIKG KIDLY+ T + V+ +WG+K V V +++ G+G  T+  LK+L  
Sbjct: 162 GYGYGVVTDTGSAIKGNKIDLYYETVEDVFNQWGRKEVEVYIVEEGDGTFTDEELKALNE 221

Query: 247 GQAIQTY 253
            +A+Q +
Sbjct: 222 NEAVQVF 228


>CAC2988_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 93

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 11/104 (10%)

Query: 129 SLKVTATGYTAGYESTGKTAKHPEYGITYSGVKVRRDKNAVSTIAADPKVIPLGSVLYIP 188
           SL+V AT YT  +           +GIT SG KV+RD +  S+IA DP VIPLG+ LY+P
Sbjct: 1   SLQVLATAYTDDFS----------FGITASGTKVKRDSDGYSSIAVDPTVIPLGTKLYVP 50

Query: 189 GYGYAVVADTGSAIKGRKIDLYFSTTKQVYKEWGKKTVVVQLIK 232
           GYGY V  DTG AIKG ++DL+F++ ++ Y +WG K V V ++K
Sbjct: 51  GYGYGVAEDTGGAIKGNRLDLFFTSERECY-DWGAKNVTVYILK 93


>BS_yabE_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 96

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 63/102 (61%), Gaps = 10/102 (9%)

Query: 130 LKVTATGYTAGYESTGKTAKHPEYGITYSGVKVRRDKNAVSTIAADPKVIPLGSVLYIPG 189
           + V++T YTA              G T +GV ++ + NA   IA DP VIPLGS +++ G
Sbjct: 4   MTVSSTAYTASCSGCS--------GHTATGVNLKNNPNA-KVIAVDPNVIPLGSKVHVEG 54

Query: 190 YGYAVVADTGSAIKGRKIDLYFSTTKQVYKEWGKKTVVVQLI 231
           YGYA+ ADTGSAIKG KID++F      Y+ WG KTV ++++
Sbjct: 55  YGYAIAADTGSAIKGNKIDVFFPEKSSAYR-WGNKTVKIKIL 95


>BS_yocH_2 [S] COG3584 Uncharacterized protein conserved in bacteria
          Length = 143

 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 63/102 (61%), Gaps = 10/102 (9%)

Query: 130 LKVTATGYTAGYESTGKTAKHPEYGITYSGVKVRRDKNAVSTIAADPKVIPLGSVLYIPG 189
           L VTAT YTA   + G  +     G+T +G+ + ++ NA   IA DP VIPLGS +Y+ G
Sbjct: 51  LTVTATAYTA---NDGGIS-----GVTATGIDLNKNPNA-KVIAVDPNVIPLGSKVYVEG 101

Query: 190 YGYAVVADTGSAIKGRKIDLYFSTTKQVYKEWGKKTVVVQLI 231
           YG A  ADTG AIKG KID+ F  +K     WG KTV V+++
Sbjct: 102 YGEATAADTGGAIKGNKIDV-FVPSKSDASNWGVKTVSVKVL 142


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.311    0.127    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,364,052
Number of extensions: 611772
Number of successful extensions: 2366
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2364
Number of HSP's successfully gapped: 10
Length of query: 265
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 161
Effective length of database: 26,383,695
Effective search space: 4247774895
Effective search space used: 4247774895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)