BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0026.p (217 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1200 [TK] COG2197 Response regulator containing a CheY-like re... 169 2e-42 lin1021 [TK] COG2197 Response regulator containing a CheY-like r... 162 4e-40 SA1700 [TK] COG2197 Response regulator containing a CheY-like re... 152 4e-37 SP0387 [TK] COG2197 Response regulator containing a CheY-like re... 149 3e-36 DR1558 [TK] COG2197 Response regulator containing a CheY-like re... 142 3e-34 >BH1200 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 209 Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 91/209 (43%), Positives = 134/209 (64%), Gaps = 5/209 (2%) Query: 3 IIKVLLVDDHDMVRMGLKTYLMLDPMFEVIGEAANGQEALNMLRNWGKEAXXXXXXXXXX 62 +IKV+LVDDH+MVRMGL YL E++GEA++G + + ++ +E Sbjct: 1 MIKVVLVDDHEMVRMGLSAYLRTQSDIEIVGEASDGHQGVKLV----QETKPDVVLMDLV 56 Query: 63 XXXXNGAETTRAVLAEFPGLKIVILTSFLEDDLVVDAIEAGAVSYVLKTVSAEELIYALQ 122 +G + T A++ G+K+++LTS+++D+ V IEAGA SY+LKT SA+E+ A++ Sbjct: 57 MEKMDGVQATEAIMNTTEGVKVIVLTSYIDDEKVYPVIEAGAFSYLLKTSSAKEIASAIR 116 Query: 123 GAFRGMPVMTGDVSQALTRGIRQRTVQGDSSGLTEREKEVLLLIAEGKTNKDIGEELHIS 182 A G V+ V+ + +R R + LT RE EVL LI EGK+N+ I +EL+I Sbjct: 117 AAANGEAVVEAKVTNKMMERMRSRKKELHEE-LTPRELEVLRLIGEGKSNQGIADELYIG 175 Query: 183 IKTVKTHVSNLLMKCELDDRTQLAIYAHR 211 IKTVKTHVSN+L K +L+DRTQ+A+YAHR Sbjct: 176 IKTVKTHVSNILHKLQLEDRTQIAVYAHR 204 >lin1021 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 212 Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/209 (42%), Positives = 133/209 (63%), Gaps = 4/209 (1%) Query: 3 IIKVLLVDDHDMVRMGLKTYLMLDPMFEVIGEAANGQEALNMLRNWGKEAXXXXXXXXXX 62 +IKVLLVDDH+MVR+G+ YL + EV+GEA NG+E +M E Sbjct: 1 MIKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAENGREGADM----ALELRPDIILMDLV 56 Query: 63 XXXXNGAETTRAVLAEFPGLKIVILTSFLEDDLVVDAIEAGAVSYVLKTVSAEELIYALQ 122 +G E T+ ++ + KI+I+TSF++D+ V A+EAGA SY+LKT +A E+ A++ Sbjct: 57 MDEMDGIEATKEIMKNWKEAKIIIVTSFIDDEKVYPALEAGASSYMLKTSTASEIADAIR 116 Query: 123 GAFRGMPVMTGDVSQALTRGIRQRTVQGDSSGLTEREKEVLLLIAEGKTNKDIGEELHIS 182 + G V+ +V+ + + + + + LT RE E+LLLIAEGK+N++I +EL I+ Sbjct: 117 ATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRENEILLLIAEGKSNQEIADELFIT 176 Query: 183 IKTVKTHVSNLLMKCELDDRTQLAIYAHR 211 +KTVKTHVSN+L K ++ DRTQ AIYA + Sbjct: 177 LKTVKTHVSNILSKLDVQDRTQAAIYAFK 205 >SA1700 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 209 Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 6/213 (2%) Query: 4 IKVLLVDDHDMVRMGLKTYLMLDPMFEVIGEAANGQEALNMLRNWGKEAXXXXXXXXXXX 63 IKVL VDDH+MVR+G+ +YL EV+GE A+G+EA+ E Sbjct: 3 IKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIA----KAHELKPDLILMDLLM 58 Query: 64 XXXNGAETTRAVLAEFPGLKIVILTSFLEDDLVVDAIEAGAVSYVLKTVSAEELIYALQG 123 +G E T + + P +K+++LTSF+ED V A++AG SY+LKT SA+++ A++ Sbjct: 59 EDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRK 118 Query: 124 AFRGMPVMTGDVSQALTRGIRQRTVQGDSSGLTEREKEVLLLIAEGKTNKDIGEELHISI 183 RG V +V + +++R + LTERE E+LLLIA+G +N++I HI+I Sbjct: 119 TSRGESVFEPEVLVKMRNRMKKRAELYEM--LTEREMEILLLIAKGYSNQEIASASHITI 176 Query: 184 KTVKTHVSNLLMKCELDDRTQLAIYAHRKGWAQ 216 KTVKTHVSN+L K E+ DRTQ IYA + Q Sbjct: 177 KTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ 209 >SP0387 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 210 Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/206 (41%), Positives = 129/206 (62%), Gaps = 7/206 (3%) Query: 4 IKVLLVDDHDMVRMGLKTYLMLDPMFEVIGEAANGQEALNMLRNWGKEAXXXXXXXXXXX 63 +K+LLVDDH+MVR+GLK+Y L EV+GEA+NG + +++ E Sbjct: 1 MKILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDL----ALELRPDVIVMDIVM 56 Query: 64 XXXNGAETTRAVLAEFPGLKIVILTSFLEDDLVVDAIEAGAVSYVLKTVSAEELIYALQG 123 NG + T A+L E+P KI+I+TS+L+++ ++ ++AGA Y+LKT SA+EL++A+ Sbjct: 57 PEMNGIDATLAILKEWPEAKILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSK 116 Query: 124 AFRGMPVMTGDVSQALTRGIRQRTVQGDSSGLTEREKEVLLLIAEGKTNKDIGEELHISI 183 G + +VS+ + R LT RE++VL LIA+G N+ I ++L IS+ Sbjct: 117 VAAGELAIEQEVSKKVEY---HRNHMELHEELTARERDVLQLIAKGYENQRIADDLFISL 173 Query: 184 KTVKTHVSNLLMKCELDDRTQLAIYA 209 KTVKTHVSN+L K E+ DRTQ A+YA Sbjct: 174 KTVKTHVSNILAKLEVSDRTQAAVYA 199 >DR1558 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 225 Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/212 (41%), Positives = 121/212 (57%), Gaps = 7/212 (3%) Query: 4 IKVLLVDDHDMVRMGLKTYLMLDPMFEVIGEAANGQEALNMLRNWGKEAXXXXXXXXXXX 63 ++VLLVDDH +VR GL+ +L LD EV+GEAANG+EAL E Sbjct: 14 VRVLLVDDHAVVRQGLRLFLGLDEGIEVVGEAANGEEALQEAERLRPEVVVMDLMMPVM- 72 Query: 64 XXXNGAETTRAVLAEFPGLKIVILTSFLEDDLVVDAIEAGAVSYVLKTVSAEELIYALQG 123 +G TR + P +++ LTS LE++ V AIEAGA+SY+LK S++ L A+ Sbjct: 73 ---DGITATRELRRRLPDTEVIALTSTLEENKVNGAIEAGAISYMLKDASSDTLADAIHA 129 Query: 124 AFRGMPVMTGDVSQALTRGIRQRTVQGDSSGLTEREKEVLLLIAEGKTNKDIGEELHISI 183 A RG + + ++ L R R ++ LT +E VL L+A G++NKDI E +S Sbjct: 130 AARGEVRLHPEAARRLVRDFRSPEMR---ESLTPKETAVLQLLARGQSNKDIAAEQGVSE 186 Query: 184 KTVKTHVSNLLMKCELDDRTQLAIYAHRKGWA 215 TVKTHVS LL K LD RTQ A+YA + G A Sbjct: 187 ATVKTHVSRLLSKLGLDSRTQAALYALKYGIA 218 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 13,631,723 Number of extensions: 486029 Number of successful extensions: 1752 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 1566 Number of HSP's successfully gapped: 187 Length of query: 217 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 115 Effective length of database: 26,614,363 Effective search space: 3060651745 Effective search space used: 3060651745 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)