BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0016.p
         (154 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin0615 [K] COG1846 Transcriptional regulators                         62   3e-10
Ta0411 [K] COG1846 Transcriptional regulators                          53   1e-07

>lin0615 [K] COG1846 Transcriptional regulators
          Length = 153

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 12  LMEAFQQFSKINWQKNNPSLLKPSEIRVLITIRLGTEKSGKPVLTVSDISKMHKVTSPTI 71
           +++AF  F     +         SE R +  +  G +  G P + VSD+  M +++ P++
Sbjct: 12  VIKAFMNFKHAEIKSFQIPGYSKSETRFIFILSRGLKSRG-PKIRVSDLGHMLRISKPSV 70

Query: 72  TQMVNSLLAQGYVVRTSDAQDKRVSGIALTDKGVRLXXXXXXXXXXTFKGMIDYLGKERS 131
           TQM+ SL  +G + R  + +DKR   + LT+ G  +          +F+ M ++LG++  
Sbjct: 71  TQMIQSLEGKGLIKRVQNPEDKRSMYVELTEVGAGVSKKMFDEFQASFEDMQEFLGEDDM 130

Query: 132 RALIELLNGVYHYF 145
           + LI LL  +  Y 
Sbjct: 131 KKLITLLEKLTDYL 144


>Ta0411 [K] COG1846 Transcriptional regulators
          Length = 153

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 58/105 (55%), Gaps = 14/105 (13%)

Query: 7   DKIDELMEAFQQFSKI---NWQKNNPSL----LKPSEIRVLITIRLGTEKSGKPVLTVSD 59
           +  D LME +  F+K+     ++   SL    LKP E+R+L  +        +    V+ 
Sbjct: 4   EDCDALMEIWHHFAKVYVLGKRRMEDSLQITQLKPIEVRILYYL-------SEENFNVNR 56

Query: 60  ISKMHKVTSPTITQMVNSLLAQGYVVRTSDAQDKRVSGIALTDKG 104
           +++M+ VT   IT +++ L  +GY+VR+ +A D+RV  + +TDKG
Sbjct: 57  LAEMNFVTPAWITGVLDDLENRGYIVRSRNASDRRVVNVEITDKG 101


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.134    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 9,835,957
Number of extensions: 310530
Number of successful extensions: 812
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 818
Number of HSP's successfully gapped: 4
Length of query: 154
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 57
Effective length of database: 27,191,033
Effective search space: 1549888881
Effective search space used: 1549888881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)