BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0015.p (622 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0647 [M] COG1368 Phosphoglycerol transferase and related prot... 363 e-100 STM1703_3 [T] COG2200 FOG: EAL domain 283 7e-76 STM1703_1 [T] COG2202 FOG: PAS/PAC domain 283 7e-76 STM1703_2 [T] COG2199 FOG: GGDEF domain 283 7e-76 BS_yqgS [M] COG1368 Phosphoglycerol transferase and related prot... 224 3e-58 >lin0647 [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 363 bits (931), Expect = e-100, Method: Compositional matrix adjust. Identities = 0/615 (0%), Positives = 0/615 (0%), Gaps = 14/615 (2%) Query: 13 ILLFTFVLLL-KSAVAWFVVFSDGPNWSMVFTEIPFFIIVFSLIEWLSSKRKILY-YMIA 70 + + + + + + L ++ Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTF-GEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRP 59 Query: 71 NLFITVIYFAVLMYYKYYGVIATYHALQQADKVTKVGESTYSLITP---YYXXXXXXXXX 127 + K+ A + + + Sbjct: 60 ETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLK 119 Query: 128 XXXXXXRPKYIAKWKERGTYRISRPXXXXXXXXXXXXCFFNIWPNHASMNEIKKAESMGI 187 Y + + A + + I Sbjct: 120 RLQTDYLDLYQVH-WPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAE--YQRAGKIRYI 176 Query: 188 LNYEVYTLFADSTEKEELIDSKEITQQAVDTVKGVQPPQQPQYAGADKGKNLIIVQMESF 247 L + + + T++ + + Sbjct: 177 GVSNETAFGVMR----YLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 Query: 248 QNFLIGLTIDGQEITPNINKLAHSNTYFNNFYTNAGQGTTSDAEFVVNSSFYVPKNEPAT 307 + L T+ G+ + A + + + Q + A +V + + + Sbjct: 233 YSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRH-GLDPAQM 291 Query: 308 SSPYMNKSVPSLPKLLSANGYFTATFHTNSVEFWNRKALYQAIGFDKYYDQSFYGDDDHI 367 Sbjct: 292 351 Query: 368 AFGSSDEVLFAKTVPELAALDAKDQPFYAMVISMSAHHPFRIPGEKFKMKLPERLEGTLL 427 Sbjct: 352 411 Query: 428 GDYIQAQNYADYAMGQFLEDLKTSGLWDDSLIVFYGDHQGVPMYTLGEDEKALLQEMIGH 487 Sbjct: 412 471 Query: 488 EYGYTDMFNIPFIVHSPGGSLPAVVDRTGGQIDILPTVSNLLGVPLQNQLHFGEDLLNSA 547 Sbjct: 472 531 Query: 548 SNLIPFRHFLPTGSFVNNTSIYLTGNDYADGSNYSLSDNSVVQGGSTEAQFEAAERLLNM 607 Sbjct: 532 591 Query: 608 SNSYLLQLPDRPDQQ 622 Sbjct: 592 606 >STM1703_3 [T] COG2200 FOG: EAL domain Length = 251 Score = 283 bits (723), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 0/391 (0%), Positives = 0/391 (0%), Gaps = 12/391 (3%) Query: 186 GILNYEVYTLFADSTEKEELIDSKEITQQAVDTVKGVQPPQQPQYAGADKGKNLIIVQME 245 L+ + + + V+ + V+ Sbjct: 155 SSLSQLARFPIDAVKLDQAFVRDIHKQPLSQSLVR----AIVAVAQALNLQVIAEGVENA 210 Query: 246 SFQNFLIGLTIDGQEITPNINKLAHSN--TYFNNFYTNAGQGTTSDAEFVVNSSFYVPKN 303 FL ++ ++ + + Sbjct: 211 KEDAFLTKNGVNERQGFLFAKPMPAVSFE- 269 Query: 304 EPATSSPYMNKSVPSLPKLLSANGYFTATFHTNSVEFWNRKALYQAIGFDKYYDQSFYGD 363 Sbjct: 270 329 Query: 364 DDHIAFGSSDEVLFAKTVPELAALDAKDQPFYAMVISMSAHHPFRIPGEKFKMKLPERLE 423 Sbjct: 330 --- 386 Query: 424 GTLLGDYIQAQNYADYAMGQFLEDLKTSGLWDDSLIVFYGDHQGVPMYTLGEDEKALLQE 483 Sbjct: 387 -- 444 Query: 484 MIGHEYGYTDMFNIPFIVHSPGGSLPAVVDRTGGQIDILPTVSNLLGVPLQNQLHFGEDL 543 Sbjct: 445 504 Query: 544 LNSASNLIPFRHFLPTGSFVNNTSIYLTGND 574 Sbjct: 505 535 >STM1703_1 [T] COG2202 FOG: PAS/PAC domain Length = 227 Score = 283 bits (723), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 0/391 (0%), Positives = 0/391 (0%), Gaps = 12/391 (3%) Query: 186 GILNYEVYTLFADSTEKEELIDSKEITQQAVDTVKGVQPPQQPQYAGADKGKNLIIVQME 245 + + + + + + + Q + +K + + E Sbjct: 155 KLFMSRREAVASRHYIENFFRNGNAYEIERWIKTR----KGQRLFLFRNKFVHNGSGKNE 210 Query: 246 SFQNFLIGLTIDGQEITPNINKLAHSN--TYFNNFYTNAGQGTTSDAEFVVNSSFYVPKN 303 Sbjct: 211 - 269 Query: 304 EPATSSPYMNKSVPSLPKLLSANGYFTATFHTNSVEFWNRKALYQAIGFDKYYDQSFYGD 363 Sbjct: 270 329 Query: 364 DDHIAFGSSDEVLFAKTVPELAALDAKDQPFYAMVISMSAHHPFRIPGEKFKMKLPERLE 423 Sbjct: 330 --- 386 Query: 424 GTLLGDYIQAQNYADYAMGQFLEDLKTSGLWDDSLIVFYGDHQGVPMYTLGEDEKALLQE 483 Sbjct: 387 -- 444 Query: 484 MIGHEYGYTDMFNIPFIVHSPGGSLPAVVDRTGGQIDILPTVSNLLGVPLQNQLHFGEDL 543 Sbjct: 445 504 Query: 544 LNSASNLIPFRHFLPTGSFVNNTSIYLTGND 574 Sbjct: 505 535 >STM1703_2 [T] COG2199 FOG: GGDEF domain Length = 182 Score = 283 bits (723), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 0/391 (0%), Positives = 0/391 (0%), Gaps = 12/391 (3%) Query: 186 GILNYEVYTLFADSTEKEELIDSKEITQQAVDTVKGVQPPQQPQYAGADKGKNLIIVQME 245 Sbjct: 155 ---- 210 Query: 246 SFQNFLIGLTIDGQEITPNINKLAHSN--TYFNNFYTNAGQGTTSDAEFVVNSSFYVPKN 303 Sbjct: 211 - 269 Query: 304 EPATSSPYMNKSVPSLPKLLSANGYFTATFHTNSVEFWNRKALYQAIGFDKYYDQSFYGD 363 Sbjct: 270 329 Query: 364 DDHIAFGSSDEVLFAKTVPELAALDAKDQPFYAMVISMSAHHPFRIPGEKFKMKLPERLE 423 Sbjct: 330 --- 386 Query: 424 GTLLGDYIQAQNYADYAMGQFLEDLKTSGLWDDSLIVFYGDHQGVPMYTLGEDEKALLQE 483 Sbjct: 387 -- 444 Query: 484 MIGHEYGYTDMFNIPFIVHSPGGSLPAVVDRTGGQIDILPTVSNLLGVPLQNQLHFGEDL 543 Sbjct: 445 504 Query: 544 LNSASNLIPFRHFLPTGSFVNNTSIYLTGND 574 Sbjct: 505 535 >BS_yqgS [M] COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Length = 346 Score = 224 bits (571), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 0/581 (0%), Positives = 0/581 (0%), Gaps = 50/581 (8%) Query: 45 IPFFIIVFSLIEWLSSKRKILYYMIANLFITVIYFAVLMYYKYYGVIATYHALQQADKVT 104 + V E + +A QA Sbjct: 49 VAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRK 108 Query: 105 KVGESTYSLITPYYXXXXXXXXXXXXXXXRPKYI-----AKWKERGTYRISRPXXXXXXX 159 + E+ + + + + Sbjct: 109 NIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLL---------- 158 Query: 160 XXXXXCFFNIWPNHA--------SMNEIKKAESMGILNYEVY--TLFADSTEKEELIDSK 209 + + + + + T+ + + Sbjct: 159 DTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVG 218 Query: 210 EITQQAVDTVKGVQPPQQPQYAGADKGKNLIIVQMESFQNFLIGLTIDGQEITPNINKLA 269 + + + + T E T Sbjct: 219 LAEV-SQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAY 277 Query: 270 HSNTYFNNFYTNAGQGTTSDAEFVVNSSFYVPKNEPATSSPYMNKSVPSLPKLLSANGYF 329 + + V S+ + L + + A Sbjct: 278 VDIARRHGLDPAQMALAFVRRQPFVASTLL-GATTMDQLKTNIESLHLELSEDVLAEIEA 336 Query: 330 TATFHTNSVEFWNRKALYQAIGFDKYYDQSFYG--DDDHIAFGSSDEVLFAKTVPELAAL 387 Sbjct: 337 396 Query: 388 DAKDQPFYAMVISMSAHHPFRIPGEKFKMKLPERLEGT--LLGDYIQAQNYADYAMGQFL 445 Sbjct: 397 ------ 450 Query: 446 EDLKTSGLWDDSLIVFYGDHQGVPMYTLGEDEKALLQEMIGHE---YGYTDMFNIPFIVH 502 Sbjct: 451 ----- 505 Query: 503 SPG--GSLPAVVDRTGGQIDILPTVSNLLGVPLQNQLHFGEDLLNSASNLIPFRHFLPTG 560 Sbjct: 506 --- 562 Query: 561 SFVNNTSIYLTGNDYADGSNYSLSDNSVVQGGSTEAQFEAA 601 Sbjct: 563 603 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 45,226,679 Number of extensions: 1980960 Number of successful extensions: 10801 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 10735 Number of HSP's successfully gapped: 21 Length of query: 622 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 510 Effective length of database: 25,461,023 Effective search space: 12985121730 Effective search space used: 12985121730 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 119 (50.4 bits)