BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0541.0008.p (989 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_shaA_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 ... 709 0.0 SA0813_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (... 568 e-161 MA4572_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (... 425 e-118 SA0578_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (... 414 e-115 BMEII0770_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit ... 381 e-105 >BS_shaA_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Length = 346 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/606 (0%), Positives = 0/606 (0%), Gaps = 3/606 (0%) Query: 60 LHAGWAVLPAPMALFVYFLLQIRSVQSGENTVATVAWMPSLGIDITLVLDGLSLLFALLI 119 + + + Q+ E + + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 120 TGMGALVVLYSIYYLEKRMESIHNFYMYLLMFMGAMLGVTLSDNLMVLYGFWELTSITSF 179 T + + E + G+ L L Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 180 LLIAFWHRRERSRYGALKSMLITVFGGLAMFAGFNLLYVMSGTYSIREITLQAGGLSLEP 239 L + + + + A L + + + + + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 240 VFIPAMLLILLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLVARLTPVF 299 ++ L A I P ++ + + L + L Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240 Query: 300 AGQSEWFWLVSVCGLVTLLYGSFKAIKQTDLKAMLAFSTVSQLGLIMCLLGLGSAAAFFS 359 TL + + KA+ A+ +++ + + Sbjct: 241 LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQP 300 Query: 360 GTEESVFYAMATAAAVFHLINHAVFKGTLFMVVGIVDHETNTRDLRKLGGLMSLMPVTFS 419 Sbjct: 301 FVA--- 357 Query: 420 VALIGALSMAGLPPFSGFLSKEMFFTAVLDIRELHVWSTQFWLLLFPVLAWIASVFTFVY 479 Sbjct: 358 417 Query: 480 SMILVFRTFTGKLQPEKLDKVPHEAPPGLLFSPVLLVSLAVIFAFFPDLLSSSLIEPAVA 539 Sbjct: 418 477 Query: 540 SIQYGLLPPEENLHVPIHFWHGWTPEIFMTLGVIATGTLLYRGYNKLRILDRKQNGQDYL 599 Sbjct: 478 537 Query: 600 NRIYDMGIRALESGSARFTNLYMTGSNRHYLLYIFGFFIIALGSTLLGAQGITLGMADYA 659 Sbjct: 538 597 Query: 660 PVSIYE 665 Sbjct: 598 603 >SA0813_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Length = 346 Score = 568 bits (1465), Expect = e-161, Method: Compositional matrix adjust. Identities = 0/632 (0%), Positives = 0/632 (0%), Gaps = 9/632 (1%) Query: 35 AVLHAAILIPFLLAVLIPLVKRI-PRLHAGWAVLPAPMALFVYFLLQIRSVQSGENTVAT 93 + + + + A L+ + + T Sbjct: 2 QYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 94 VAWMPSLGIDITLVLDGLSLLFALLITGMGALVVLYSIYYLEKRMESIHNFYMYLLMFMG 153 + + L + I + + + Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQAL-DRKNIREALHDSLKR 120 Query: 154 AMLGVTLSDNLMVLYGFWELTSITSFLLIAFWHRRERSRYGALKSMLITVFGGLAMFAGF 213 + + + + Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 214 NLLYVMSGTYSIREITLQAGGLSLEPVFIPAMLLILLGAFTKSAQFPFHIWLPDAMEAPT 273 + + + + ++++ + +G S + + T Sbjct: 181 ETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGT 240 Query: 274 PVSAYLHSATMVKAGLYLVARLTPVFAGQSEWFWLVSVCGLVTLLYGSFKAIKQTDLKAM 333 YL+ A A L +R T Q++ V + + Sbjct: 241 LTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQP 300 Query: 334 LAFSTVSQLGLIMCLLGLGSAAAFFSGTEESVFYAMATAAAVFHLINHAVFKGTLFMVVG 393 ST+ + L + Sbjct: 301 FVASTLLGATTMDQLKTNIESLHLELS- 359 Query: 394 IVDHETNTRDLRKLGGLMSLMPVTFSVALIGALSMAGLPPFSGFLSKEMFFTAVLDIREL 453 Sbjct: 360 419 Query: 454 HVWSTQFWLLLFPVLAWIASVFTFVYSMILVFRTFTGKLQPEKLDKVPHEAPPGLLFSPV 513 Sbjct: 420 479 Query: 514 LLVSLAVIFAFFPDLLSSSLIEPAVASIQYGLLPPEENLHVPIHFWHGWTPEIFMTLGVI 573 Sbjct: 480 ----- 534 Query: 574 ATGTLLYRGYNKLRILDRKQNGQDYLNRIYDMGIRALESGSARFTNLYMTGSNRHYLLYI 633 Sbjct: 535 594 Query: 634 FGFFIIALGSTLLGAQGITLGMADYAPVSIYE 665 Sbjct: 595 - 625 >MA4572_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Length = 346 Score = 425 bits (1092), Expect = e-118, Method: Compositional matrix adjust. Identities = 0/549 (0%), Positives = 0/549 (0%), Gaps = 26/549 (4%) Query: 40 AILIPFLLAVLIPLVKRIPRLHAGWAVLPAPMALFVYFLLQIRSVQSGENTVATVAWMPS 99 ++ + L + ++ A + A + + Sbjct: 10 SLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYV 69 Query: 100 LGIDITLVLDGLSLLFALLITGMGALVVLYSIYYLEKRMESIHNFYMYLLMFMGAMLGVT 159 ++ + + R ++I L + Sbjct: 70 GNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDR-KNIREALHDSLKRLQTDYLDL 128 Query: 160 LSDNLMVLYGFWELTSITSFLLIAFWHRRERSRYGALKSMLITVFGGLAMFAGFNLLYVM 219 + S+ A + + + + + Sbjct: 129 YQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMR 188 Query: 220 SGTYSIREITLQAGGLSL---EPVFIPAMLLILLGAFTKSAQFPFHIWLPDAMEAPTPVS 276 + + + + + L + + + + Sbjct: 189 YLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNG 248 Query: 277 AYLHSATMVKAGLYLVARLTPVFAGQSEWFWLVSVCGLVTLLYGSFKAIKQTDLKAMLAF 336 A A + + + + GL +Q + + L Sbjct: 249 AKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLG 308 Query: 337 STVSQLGLIMCLLGLGSAAAFFSGTEESVFYAMATAAAVFHLINHAVFKGTLFMVVGIVD 396 +T E Sbjct: 309 ATTMDQLKTNIESL-------HLELSED--- 358 Query: 397 HETNTRDLRKLGGLMSLMPVTFSVALIGALSMAGLPPFSGFLSKEMFFTAVLDIRELHVW 456 Sbjct: 359 -- 416 Query: 457 STQF---WLLLFPVLAWIASVFTFVYSMILVFRTFTGKLQPEKLDKVPHEAPPGLLFSP- 512 Sbjct: 417 476 Query: 513 VLLVSLAVIFAFFPDLLSSSLIEPAVASIQYGLLPPEENLHVPIHFWHGWTPEIFMTLGV 572 Sbjct: 477 ------ 530 Query: 573 IATGTLLYR 581 Sbjct: 531 539 >SA0578_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Length = 346 Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust. Identities = 0/588 (0%), Positives = 0/588 (0%), Gaps = 11/588 (1%) Query: 55 KRIPRLHAGWAVLPAPMALFVYFLLQIRSVQSGENTVATVAWMPSLGIDITLVLDGLSLL 114 A L+ + + T + + L Sbjct: 23 FGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKL 82 Query: 115 FALLITGMGALVVLYSIYYLEKRMESIHNFYMYLLMFMGAMLGVTLSDNLMVLYGFWELT 174 + I + ++ + + L Sbjct: 83 IIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFG 142 Query: 175 SITSFLLIAFWHRRERSRYGALKSMLITVFGGLAMFAGFNLLYVMSGTYSIREITLQAGG 234 + + AL + VM + + L Sbjct: 143 KLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIV 202 Query: 235 LSLEPVFIPAMLLILLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYLVAR 294 P + + A + + + Sbjct: 203 TIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRF 262 Query: 295 LTPVFAGQSEWFWLVSVCGLVTLLYGSFKAIKQTDLKAMLAFSTVSQLGLIMCLLGLGSA 354 + L + A+ + +A + + + + S Sbjct: 263 TRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESL 322 Query: 355 AAFFSGTEESVFYAMATAAAVFHLINHAVFKGTLFMVVGIVDHETNTRDLRKLGGLMSLM 414 Sbjct: 323 382 Query: 415 PVTFSVALIGALSMAGLPPFSGFLSKEMFFTAVLDIRELHVWSTQFWLLLFPVLAW---I 471 Sbjct: 383 ---- 438 Query: 472 ASVFTFVYSMILVFRTFTGKLQPEKLDKVP-HEAPPGLLFSPVLLVSLAVIFAFFPDLLS 530 Sbjct: 439 - 497 Query: 531 SSLIEPAVASIQYGLLPPEENLHVPIHFWHGWTPEIFMTLGVIATGTLLYRGYNKLRILD 590 Sbjct: 498 - 556 Query: 591 RKQNGQDYLNRIYDMGIRALESGSARFTNLYMTGSNRHYLLYIFGFFI 638 Sbjct: 557 - 603 >BMEII0770_1 [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit Length = 346 Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust. Identities = 0/531 (0%), Positives = 0/531 (0%), Gaps = 32/531 (6%) Query: 53 LVKRIPRLHAGWAVLPAPMALFVYFLLQIRSVQSGENTVATVAWMPSLGIDITLVLDGLS 112 A L +A + + +G + Sbjct: 22 TFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREK 81 Query: 113 LLFALLITGMGALVVLYSIYYLEKRMESIHNFYMYLLMFMGAMLGVTLSDNLMVLYGFWE 172 L+ A ++G ++ + + L Sbjct: 82 LIIASKVSGPSRNNDKGIRPDQALD-RKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNC 140 Query: 173 LTSITSFLLIAFWHRRERSRYGALKSMLITVFGGLAMFAGFNLLYVMSGTYSIREITLQA 232 + + AL + VM + + Sbjct: 141 FGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKH-DLP 199 Query: 233 GGL-SLEPVFIPAMLLILLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGLYL 291 + P + + A + + + Sbjct: 200 RIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLF 259 Query: 292 VARLTPVFAGQSEWFWLVSVCGLVTLLYGSFKAIKQTDLKAMLAFSTVSQLGLIMCLLGL 351 + L + A+ + +A + + + + Sbjct: 260 SRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNI 319 Query: 352 GSAAAFFSGTEESVFYAMATAAAVFHLINHAVFKGTLFMVVGIVDHETNTRDLRKLGGLM 411 S Sbjct: 320 ES-------------- 365 Query: 412 SLMPVTFSVALIGALSMAGLPPFSGFLSKEMFFTAVLDIRELHVWSTQFWL-LLFPVLAW 470 Sbjct: 366 ------ 419 Query: 471 IASVFTFVYSMILVFRTFTGKLQPEKLDKVPHEAPPGLLFSPV-LLVSLAVIFAFFPDLL 529 Sbjct: 420 -- 477 Query: 530 SSSLIEPAVASIQYGLLPPEENLHVPIHFWHGWTPEIFMTLGVIATGTLLY 580 Sbjct: 478 ----- 523 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.143 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 68,475,896 Number of extensions: 2857594 Number of successful extensions: 8068 Number of sequences better than 1.0e-05: 146 Number of HSP's gapped: 7582 Number of HSP's successfully gapped: 147 Length of query: 989 Length of database: 38,378,431 Length adjustment: 116 Effective length of query: 873 Effective length of database: 24,999,687 Effective search space: 21824726751 Effective search space used: 21824726751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 121 (51.2 bits)