BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0541.0005.p
         (145 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FN2010 [K] COG1846 Transcriptional regulators                          69   2e-12
SMc00146 [K] COG1846 Transcriptional regulators                        55   5e-08
SA0322 [K] COG1846 Transcriptional regulators                          54   6e-08
MA1863 [K] COG1846 Transcriptional regulators                          51   6e-07
L114370 [K] COG1846 Transcriptional regulators                         50   9e-07

>FN2010 [K] COG1846 Transcriptional regulators
          Length = 160

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 74/132 (56%)

Query: 14  LISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQPTVTV 73
           LI+K++    + +   + ++GI       G +L +L+Q+D ++ KELA++  L + T+TV
Sbjct: 8   LITKLKQLHSRSLAQCISEQGIDAFSGEQGKILFVLWQKDKVTQKELASETGLAKNTITV 67

Query: 74  LVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPGQRED 133
           ++ K+E+   + RI    D R + + LTD + +LK    +ISD++ + +Y G +  + + 
Sbjct: 68  MLEKMEKNNLIRRITDENDKRKSLVILTDHAKSLKKCSDKISDEMTKKMYEGFSEEEIDK 127

Query: 134 LEFLLEHIYRRF 145
            E  L  I + F
Sbjct: 128 FEEYLHRIIKNF 139


>SMc00146 [K] COG1846 Transcriptional regulators
          Length = 163

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 51/89 (57%)

Query: 37  DIVPSHGDVLGLLFQQDGLSIKELANKVHLTQPTVTVLVNKLERLGYVDRIKRGEDSRVT 96
           D+ P H D+L  L++ DG++ +ELA K+ + +  +++L+ +LER G ++R     D RV 
Sbjct: 45  DVKPPHLDILVNLYRFDGITQQELARKLLVGRSNMSMLLPQLERRGLIERRGDARDKRVL 104

Query: 97  FIKLTDKSLALKPAFQEISDKLNEAIYGG 125
            + LT    AL     EI   L E+ +GG
Sbjct: 105 RLSLTSAGRALTEEAMEIQTALIESSHGG 133


>SA0322 [K] COG1846 Transcriptional regulators
          Length = 139

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)

Query: 22  AHKMIVSELEKRGIGDIVPSHGDVLGLLF--QQDGLSIKELANKVHLTQPTVTVLVNKLE 79
           +H+M     +K    DI    G  LG L+  QQDGL+  ++A  +  T PTV+ L+  LE
Sbjct: 13  SHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE 72

Query: 80  RLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPGQREDLE 135
           R   + R    +D+R   I LT   + L  AF  I D++ + +   L+  + E ++
Sbjct: 73  RKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMK 128


>MA1863 [K] COG1846 Transcriptional regulators
          Length = 139

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 15  ISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGLLFQQDGLSIKELANKVHLTQPTVTVL 74
           +SK ++E    I+SE    G+ DI       L ++ +   ++   LA     ++PT+T +
Sbjct: 15  LSKTKNECSCEILSEC---GLSDITVKQIGYLKIIDEHGDVTFSRLAKITRNSKPTITEM 71

Query: 75  VNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIYGGLNPGQREDL 134
           VNK  ++  V + K  ED R+ +I+LT+K   +  A +    ++ E + G L+  + + L
Sbjct: 72  VNKFVKMDCVYKEKSPEDGRIFYIRLTEKGRRIARAEENALLRVIEKMAGSLDEKEIDTL 131

Query: 135 EFLLEHIY 142
             LLE ++
Sbjct: 132 INLLEKVW 139


>L114370 [K] COG1846 Transcriptional regulators
          Length = 291

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 8/138 (5%)

Query: 10  NALSLISKIRSEAHKMIVSELEKRGIGDIVPSHGDVLGL------LFQQDGLSIKELANK 63
           N L+L SK+    +  I+  L   GI   + + G+  G       L+ +DG++  E+A  
Sbjct: 7   NLLNLFSKLLHNPN--ILFALRADGISKQMKNRGNRNGAQGLLVELWNKDGITNAEIAEL 64

Query: 64  VHLTQPTVTVLVNKLERLGYVDRIKRGEDSRVTFIKLTDKSLALKPAFQEISDKLNEAIY 123
           + +   +VT  V +LE    V R +   D RV+ I LTDK    +     + + ++E I+
Sbjct: 65  LDIKPSSVTAQVKQLEEAEMVIRKQDENDKRVSRIFLTDKGREAQETRDTMHNDISETIF 124

Query: 124 GGLNPGQREDLEFLLEHI 141
           G L   ++E L FL+E +
Sbjct: 125 GNLTDEEQEQLAFLMEKL 142


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.138    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,391,084
Number of extensions: 388293
Number of successful extensions: 3050
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 3057
Number of HSP's successfully gapped: 17
Length of query: 145
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 49
Effective length of database: 27,306,367
Effective search space: 1338011983
Effective search space used: 1338011983
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)