BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0538.0021.p (227 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0453 [V] COG1136 ABC-type antimicrobial peptide transport sys... 262 3e-70 SMc04351_1 [V] COG1136 ABC-type antimicrobial peptide transport ... 213 3e-55 AF1819 [V] COG1136 ABC-type antimicrobial peptide transport syst... 210 2e-54 MJ1508 [V] COG1136 ABC-type antimicrobial peptide transport syst... 207 1e-53 MJ0796 [V] COG1136 ABC-type antimicrobial peptide transport syst... 204 8e-53 >CAC0453 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 18/226 (7%), Positives = 37/226 (16%) Query: 1 MEFLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPT 60 M+ I ++ + + + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 61 SGKVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKRKVNGE 120 V L F +Q T + R Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 + E + T L I D + Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVR 226 + + S K + + T ++ + E V Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVM 226 >SMc04351_1 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 12/222 (5%), Positives = 44/222 (19%), Gaps = 3/222 (1%) Query: 3 FLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPTSG 62 I +L +Q +LD+V+ ++ + I + S Sbjct: 4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 63 Query: 63 KVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMD--KRKVNGE 120 + ++ ++ + ++ Sbjct: 64 VALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 + + + + S +Q + G Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRD 222 + ++ + + + ++ A + Sbjct: 184 TRPSQDKDDE-QEVFYTTALAQDQADGYVLTGHPVMLQGGEY 224 >AF1819 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 18/223 (8%), Positives = 39/223 (17%), Gaps = 7/223 (3%) Query: 4 LKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPTSGK 63 + + L E + + K ++ T I + K Sbjct: 2 DQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 64 VYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLP--ILMDKRKVNGER 121 + + + +R + P R Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPL--- 118 Query: 122 LNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEII 181 L E + + L + G Q S ++ + + Sbjct: 119 --RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPP 176 Query: 182 KLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDER 224 L + + Q A Sbjct: 177 VLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVML 219 >MJ1508 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 207 bits (526), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 18/220 (8%), Positives = 39/220 (17%), Gaps = 3/220 (1%) Query: 3 FLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPTSG 62 + + L E + + K ++ T I + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 63 KVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKR--KVNGE 120 K + + + +R + P Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 RLNDLLEMLGLQDRKTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRNGHEI 180 + E + T L I D + Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 181 IKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVV 220 + + S K + QAD + ++ Sbjct: 181 LNETRPSQDK-DDEQEVFYTTALAQDQADGYVLTGHPVML 219 >MJ0796 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 15/230 (6%), Positives = 42/230 (18%), Gaps = 6/230 (2%) Query: 3 FLKIENLCKLYGKAENQVTALDHVSLTLEKGEFTAIIGSSGSGKSTLLHIIGGVDVPTSG 62 + + L E + + K ++ T I + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 63 KVYLEGQDVYAQSNEKLAIFRRRQVGLIYQFHNLIPTLNVVENITLPILMDKR-KVNGE- 120 K + + + +R + P + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 121 ---RLNDLLEMLGLQDR-KTHLPNQLSGGQQQRVSIGRALMNAPAVMLADEPTGSLDSRN 176 + + + + +Q L + PT Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 177 GHEIIKLLKESNQKYGQTLLLVTHDENIALQADRIIGISDGKVVRDERVR 226 +E + +++ + D+ + G Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQGGEYVMFTYE 230 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,906,953 Number of extensions: 758047 Number of successful extensions: 17565 Number of sequences better than 1.0e-05: 2173 Number of HSP's gapped: 14455 Number of HSP's successfully gapped: 2417 Length of query: 227 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 124 Effective length of database: 26,499,029 Effective search space: 3285879596 Effective search space used: 3285879596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 114 (48.5 bits)