BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0538.0020.p
         (861 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0454 [V] COG0577 ABC-type antimicrobial peptide transport sys...   100   1e-20
Cgl2500 [V] COG0577 ABC-type antimicrobial peptide transport sys...    56   3e-07

>CAC0454 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 0/903 (0%), Positives = 0/903 (0%), Gaps = 116/903 (12%)

Query: 1   MNIFNKVTLQSMKKSRTRTIVTIIGVVLSAAMITGVATFGVSLLNYMANGAAQKYGGWHV 60
           M+    +    +           +  V + A  +      +          A        
Sbjct: 1   MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60

Query: 61  EFVNVDSSFTQERALDKGVANSATVENIGYAKLDGGKNPKKPYLF----MAGFSKKAFDT 116
           +         +            + +    A     +  + P L+               
Sbjct: 61  KSAVALRLTARPILDIALQYRFDSQQTFTRAFKK--QFAQTPALYRRSPEWSAFGIRPPL 118

Query: 117 --LPIN---LMSGRLP-ENSGEILVPMSAEVNSGVNFAEGDTLSLAVGNRMNGNKNLGQH 170
                         L       +    S  +    +        +    +   +      
Sbjct: 119 RLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISD----FRHEMRY--QFWHDFLGNAP 172

Query: 171 DPYISGKETLVPKAKRTYNVVGIYYLPGFEEPSAPGYTLITKADAGDTADSLNLFVTLKN 230
                                        ++     +     A                 
Sbjct: 173 TIPPVLY------GLNETRPSQ------DKDDEQEVFYTTALAQDQ--------ADGYV- 211

Query: 231 PRGVHAYASSTAGTGAYVFNDNVLRFMGL---SGDNIFNTLLYSVGGILVAL---IMIGS 284
               H       G       + +   +     +       +L         +        
Sbjct: 212 -LTGH-PVMLQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAED 269

Query: 285 IFLIYNSFNISLNERTHQFGILSSVGATARQLRNSVLFEGLCXXXXXXXXXXXXXXXSIR 344
                                                                       
Sbjct: 270                                                              329

Query: 345 LVISVVARNFENILYTNVPLTLXXXXXXXXXXXXXXXXXXXXXXYIPARKAASTPVMEII 404
                                                                       
Sbjct: 330 ---                                                          386

Query: 405 RQTNEVKVESKAVKTSKLAQRIYGLEGTLALKNFKRNKKRYRXXXXXXXXXXXXXXXTSA 464
                                                                       
Sbjct: 387 --                                                           444

Query: 465 FVTDLKQWSERAVVYTTFDIIMSTQDMN-DSEMLPLYDKLKTADGVY---ESSYQALMKY 520
                                                                       
Sbjct: 445 --                                                           502

Query: 521 SCVAKASDLSDD--------YWKYAGSHSPDETVNLPMEIQFLDDSAYLNIIKSLNLPEE 572
                                                                       
Sbjct: 503 -                                                            561

Query: 573 EYTGQNAKMIAVAKMKNHMKDNREEE-------VANISDLFKSSSMNFTIAPETN----- 620
                                                                       
Sbjct: 562                                                              621

Query: 621 GKPKMEQERNVSIKFVNTVPPDGPSIPEDSKVKNPFIFKVMVPYSIKEKFETSDTHVAIK 680
                                                                       
Sbjct: 622 ---                                                          678

Query: 681 ALTFRSKTPIQSTAKMEAMIKGAGIKSNYTLYNFSKVLDENRNMIFIANVFAYTFIIMIS 740
                                                                       
Sbjct: 679 ------------------                                           720

Query: 741 LITVANVFNTISTNIKLRRRELAMLRSVGMSERDFQKMMNFECAFYGMRALIFGLPIAAI 800
                                                                       
Sbjct: 721 -------                                                      773

Query: 801 SAWLIYKVMGGGADNIAFVFPWXXXXXXXXXXX----XXXXXTMLYAISKIKRENIIDAL 856
                                                                       
Sbjct: 774 -----                                                        828

Query: 857 RDD 859
              
Sbjct: 829     831


>Cgl2500 [V] COG0577 ABC-type antimicrobial peptide transport system,
           permease component
          Length = 289

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 0/126 (0%), Positives = 0/126 (0%)

Query: 733 YTFIIMISLITVANVFNTISTNIKLRRRELAMLRSVGMSERDFQKMMNFECAFYGMRALI 792
                                                                       
Sbjct: 728                                                              787

Query: 793 FGLPIAAISAWLIYKVMGGGADNIAFVFPWXXXXXXXXXXXXXXXXTMLYAISKIKRENI 852
                                                                       
Sbjct: 788                                                              847

Query: 853 IDALRD 858
                 
Sbjct: 848        853


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 54,343,309
Number of extensions: 2195080
Number of successful extensions: 4696
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4697
Number of HSP's successfully gapped: 4
Length of query: 861
Length of database: 38,378,431
Length adjustment: 115
Effective length of query: 746
Effective length of database: 25,115,021
Effective search space: 18735805666
Effective search space used: 18735805666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)