BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0535.0005.p
         (116 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_resD [TK] COG0745 Response regulators consisting of a CheY-li...    87   8e-18
lin2062 [TK] COG0745 Response regulators consisting of a CheY-li...    84   4e-17
BH1153 [TK] COG0745 Response regulators consisting of a CheY-lik...    83   1e-16
CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li...    79   2e-15
BS_yrkP [TK] COG0745 Response regulators consisting of a CheY-li...    78   3e-15

>BS_resD [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Length = 240

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/93 (44%), Positives = 61/93 (65%), Gaps = 1/93 (1%)

Query: 5  TNILIADDNDEIREIVRVLLKSEGFHIIEAVDGDDAVHKADE-TIDLFILDIMMPGKSGF 63
          T IL+ DD   IR ++R+ L+ E + I EA +GD+A+ K  E   DL +LD+MMPG  G 
Sbjct: 7  TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66

Query: 64 KACVEIREKSSAPILFLTAKTQDSDKYMAFSAG 96
          + C +IREK + PI+ LTAK +++++   F AG
Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAG 99


>lin2062 [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Length = 238

 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 62/97 (63%), Gaps = 1/97 (1%)

Query: 1  MNYTTNILIADDNDEIREIVRVLLKSEGFHIIEAVDGDDAVHKA-DETIDLFILDIMMPG 59
          M+    +L+ DD D IR ++++ L+ E + I EA DGD A++ A +   ++ +LD+MMPG
Sbjct: 1  MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPG 60

Query: 60 KSGFKACVEIREKSSAPILFLTAKTQDSDKYMAFSAG 96
          K G + C E+RE  S P++ LTAK +++++   F  G
Sbjct: 61 KDGIEVCRELREYKSTPVVMLTAKGEEANRVQGFEVG 97


>BH1153 [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Length = 232

 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 64/97 (65%), Gaps = 1/97 (1%)

Query: 1  MNYTTNILIADDNDEIREIVRVLLKSEGFHIIEAVDGDDAVHKADET-IDLFILDIMMPG 59
          M    N+L+ DD+ EIRE + + LK+EG ++ +A DG +A+ + +E  I L +LD+MMP 
Sbjct: 1  MTQGYNVLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPR 60

Query: 60 KSGFKACVEIREKSSAPILFLTAKTQDSDKYMAFSAG 96
            G +  ++IRE  + PI+FL+AK++++DK +    G
Sbjct: 61 LDGIQTTLKIREARNIPIIFLSAKSEEADKVLGLQVG 97


>CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Length = 233

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 60/91 (65%), Gaps = 1/91 (1%)

Query: 7  ILIADDNDEIREIVRVLLKSEGFHIIEAVDGDDAVHKADET-IDLFILDIMMPGKSGFKA 65
          +L+ DD  EIR+++ + L +EGF++I+A +G +A+    +T + L +LDIMMP   G   
Sbjct: 6  VLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDGITT 65

Query: 66 CVEIREKSSAPILFLTAKTQDSDKYMAFSAG 96
          C++IRE  + PI+ L+AK +D DK +  + G
Sbjct: 66 CMKIREDKNTPIIMLSAKGEDMDKILGLTTG 96


>BS_yrkP [TK] COG0745 Response regulators consisting of a CheY-like
          receiver domain and a winged-helix DNA-binding domain
          Length = 231

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 58/91 (63%)

Query: 6  NILIADDNDEIREIVRVLLKSEGFHIIEAVDGDDAVHKADETIDLFILDIMMPGKSGFKA 65
           IL+ +D+++I +++   L   G+ ++ A DG  A+   ++++DL ILDIMMPG SG + 
Sbjct: 4  RILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDSLDLVILDIMMPGISGIET 63

Query: 66 CVEIREKSSAPILFLTAKTQDSDKYMAFSAG 96
          C  IR+ S+ PILFLTA++   DK     AG
Sbjct: 64 CQHIRKSSNVPILFLTARSSTLDKTEGLLAG 94


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,615,102
Number of extensions: 257332
Number of successful extensions: 1259
Number of sequences better than 1.0e-05: 214
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 214
Length of query: 116
Length of database: 38,378,431
Length adjustment: 83
Effective length of query: 33
Effective length of database: 28,805,709
Effective search space: 950588397
Effective search space used: 950588397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)