BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0020.p (214 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA0421 [P] COG2011 ABC-type metal ion transport system, permease... 194 8e-50 STM0246 [P] COG2011 ABC-type metal ion transport system, permeas... 128 7e-30 lin0311 [P] COG2011 ABC-type metal ion transport system, permeas... 128 8e-30 YPO1072 [P] COG2011 ABC-type metal ion transport system, permeas... 127 2e-29 PA2351 [P] COG2011 ABC-type metal ion transport system, permease... 125 6e-29 >SA0421 [P] COG2011 ABC-type metal ion transport system, permease component Length = 219 Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 139/212 (65%) Query: 3 SEQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINIIRS 62 S Q +QA+ +T+YMV ++LF TR G+ N +++ +LNP+INI+RS Sbjct: 8 SAQLLQALYETLYMVSIALFLGAVIGIPLGVLLVITRKQGIWPNIVIHQVLNPLINILRS 67 Query: 63 LPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAAES 122 LPFIILL+AI+PFT+++V TSIGT AAIVPL +Y+APYI RLVENSLLEV+ GI+EAA++ Sbjct: 68 LPFIILLIAIVPFTKLVVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDEGIIEAAKA 127 Query: 123 MGATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQRFD 182 MGA+P Q+IR+FL+PEA+GSL+L+ DLA+VYGYQRFD Sbjct: 128 MGASPLQIIRYFLIPEALGSLVLAITTAIIGLIGSTAMAGAVGGGGIGDLALVYGYQRFD 187 Query: 183 XXXXXXXXXXXXXXXQGIQSLGNSLARKIRRY 214 Q IQ+LGN LAR IRR+ Sbjct: 188 TTVIIITVIVLVIIVQVIQTLGNVLARFIRRH 219 >STM0246 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 64/107 (59%), Positives = 84/107 (78%) Query: 38 TRPGGVLENKLLYTLLNPVINIIRSLPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYI 97 TRPG ++EN LY L+ V+NI RS+PFIILLV +IPFTR+IV TSIG AAIVPL + Sbjct: 41 TRPGQIMENARLYRSLSAVVNIFRSIPFIILLVWMIPFTRIIVGTSIGLQAAIVPLTVGA 100 Query: 98 APYIGRLVENSLLEVNPGIMEAAESMGATPFQVIRFFLLPEAVGSLI 144 AP+I R+VEN+LLE+ G++EA+ +MGATP Q++R LLPEA+ L+ Sbjct: 101 APFIARMVENALLEIPAGLIEASRAMGATPLQIVRKILLPEALPGLV 147 >lin0311 [P] COG2011 ABC-type metal ion transport system, permease component Length = 220 Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 71/206 (34%), Positives = 112/206 (54%) Query: 8 QAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINIIRSLPFII 67 Q ++T+ M G++L TR GG EN ++Y++LN VINI+RSLPFII Sbjct: 14 QGFLETLTMTGITLVISLAIGLPLGVFLTLTRKGGQSENLVVYSILNWVINILRSLPFII 73 Query: 68 LLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAAESMGATP 127 LL +IP TR +V T+IG I+PL+++ APYI RL+E++LLEV+ G++EA ++MG + Sbjct: 74 LLFLMIPVTRFVVGTTIGIQGVIMPLVVFTAPYIARLMESALLEVDRGVIEAYQAMGIST 133 Query: 128 FQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQRFDXXXXX 187 ++I ++ EA ++L +A YG+QRF+ Sbjct: 134 PKIIWSVVIREARSGIVLGLTIATIGLIGATAMAGLVGAGGLGTIAYQYGFQRFEPTVMY 193 Query: 188 XXXXXXXXXXQGIQSLGNSLARKIRR 213 Q +QS GN L+R++++ Sbjct: 194 TTIIILIIMVQALQSFGNFLSRRLKK 219 >YPO1072 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 64/107 (59%), Positives = 83/107 (77%) Query: 38 TRPGGVLENKLLYTLLNPVINIIRSLPFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYI 97 TRPG ++ N +Y L+ V+NI RS+PFIILLV +IPFTRMIV TSIG AAIVPL + Sbjct: 41 TRPGQIIANNKIYRTLSGVVNIFRSIPFIILLVWMIPFTRMIVGTSIGLQAAIVPLTVGA 100 Query: 98 APYIGRLVENSLLEVNPGIMEAAESMGATPFQVIRFFLLPEAVGSLI 144 AP+I R+VEN+LLE+ G++EAA +MGATP Q+I+ LLPEA+ L+ Sbjct: 101 APFIARMVENALLEIPSGLVEAARAMGATPMQIIKKVLLPEALPGLV 147 >PA2351 [P] COG2011 ABC-type metal ion transport system, permease component Length = 217 Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 75/210 (35%), Positives = 105/210 (50%) Query: 4 EQFIQAIIDTVYMVGMSLFXXXXXXXXXXXXXXXTRPGGVLENKLLYTLLNPVINIIRSL 63 E+ Q +DT+ M+G S T PGG+ E +LL +L ++N++RS+ Sbjct: 6 ERLWQGFLDTLLMIGASSAIVLLVGIPLALVLVTTGPGGIFEARLLNRILGGLVNVLRSV 65 Query: 64 PFIILLVAIIPFTRMIVHTSIGTNAAIVPLILYIAPYIGRLVENSLLEVNPGIMEAAESM 123 PF+IL+VA+IPFTRMIV TS G AA+VPL + P+ R+ E SL EV+ G++EAA++M Sbjct: 66 PFLILMVALIPFTRMIVGTSYGVWAAVVPLTIAATPFFARIAEVSLREVDHGLVEAAQAM 125 Query: 124 GATPFQVIRFFLLPEAVGSLILSXXXXXXXXXXXXXXXXXXXXXXXXDLAIVYGYQRFDX 183 G +I LLPEA ++ DLA YGYQRFD Sbjct: 126 GCERRHIICNVLLPEARPGIVGGFTITLVTMINSSAMAGAIGAGGLGDLAYRYGYQRFDT 185 Query: 184 XXXXXXXXXXXXXXQGIQSLGNSLARKIRR 213 IQ G+ LAR + + Sbjct: 186 QVMLTVIIVLVLLVTLIQFGGDRLARLLNK 215 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.145 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,769,878 Number of extensions: 326338 Number of successful extensions: 1519 Number of sequences better than 1.0e-05: 13 Number of HSP's gapped: 1552 Number of HSP's successfully gapped: 13 Length of query: 214 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 112 Effective length of database: 26,614,363 Effective search space: 2980808656 Effective search space used: 2980808656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 113 (48.1 bits)