BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0015.p (216 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll6782 [K] COG1802 Transcriptional regulators 99 3e-21 PA0797 [K] COG1802 Transcriptional regulators 86 3e-17 BMEII0281 [K] COG1802 Transcriptional regulators 81 1e-15 PA1520 [K] COG1802 Transcriptional regulators 80 3e-15 RSp0436 [K] COG1802 Transcriptional regulators 79 4e-15 >mll6782 [K] COG1802 Transcriptional regulators Length = 224 Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 2/204 (0%) Query: 3 KDNTYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRL 62 +D Y +++ I+ +LKPG+ ++E ++A LGVSRTP+REA++R+ +E + Sbjct: 15 RDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLVKILAQTGT 74 Query: 63 KVAPITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDAL 122 VAPI+ +LEE +++R LE A+ AA TP + + + ++ G A+ Sbjct: 75 YVAPISRADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAISRGRYATAI 134 Query: 123 PFGFEFHDYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGE-WNSQAYEEHSLILQRIV 181 FH ++EI GL R + + + RY+++ + Q E+H IL + Sbjct: 135 QLDDVFHRTIAEICGLPMIWRAVD-ISKAQMDRGRYLAIPKPGYGEQTIEQHEAILDALK 193 Query: 182 ERDEEGAEKVMQDHISNSLSTALK 205 D EGA + M++H+ SL L+ Sbjct: 194 RHDAEGAAQAMENHLETSLRNTLE 217 >PA0797 [K] COG1802 Transcriptional regulators Length = 240 Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 62/199 (31%), Positives = 101/199 (50%), Gaps = 3/199 (1%) Query: 4 DNTYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLK 63 ++ + +++ I+ E+ PG + E LA G+SR PLREAI RLE LVR P+ + Sbjct: 20 EHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVRVPHVGAR 79 Query: 64 VAPITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVE--KTNQSLYLGSDKDA 121 V ++ EL E++ +R LEG + AA+ + +I + +++ + +++ G Sbjct: 80 VVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEAFQAGRGYYQ 139 Query: 122 LPFGFEFHDYLSEISGLHTFERILSQLRDHTLRYCRY-VSLHGEWNSQAYEEHSLILQRI 180 ++FH + + SG T R+L +R R S QA+ EH IL I Sbjct: 140 QEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRILDAI 199 Query: 181 VERDEEGAEKVMQDHISNS 199 +RD E AE +M+ HIS S Sbjct: 200 ADRDGELAELLMRRHISAS 218 >BMEII0281 [K] COG1802 Transcriptional regulators Length = 238 Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 94/187 (50%) Query: 10 LKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVAPITV 69 L+++I + PG + +E +A G+SRTPLREA++ LE + ++ P ++VA + Sbjct: 30 LRERIYAGDYAPGAILRQEHIATEFGISRTPLREALRVLERDGLVIHLPGRGVRVASADL 89 Query: 70 EELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFGFEFH 129 L + + VR +L+G A+ AA+ A+ DI + A V ++ + K +FH Sbjct: 90 TRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHVAGQDKVVDPWDPKAYTQSNVDFH 149 Query: 130 DYLSEISGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVERDEEGAE 189 + +G + + LR + + SL + A EH+ I++ I RD E AE Sbjct: 150 MAVMNTAGNASLIAFVPLLRMTSQVFAPSFSLSVDRARDAIREHAAIVEAIAARDGEEAE 209 Query: 190 KVMQDHI 196 ++ + HI Sbjct: 210 RLARAHI 216 >PA1520 [K] COG1802 Transcriptional regulators Length = 259 Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 98/194 (50%), Gaps = 7/194 (3%) Query: 6 TYFELKQKIIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVA 65 Y + I++ L PG + EE+L + GVSRT +R A+ RL +E ++ +PN VA Sbjct: 27 VYAHIFDAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHEQVVLLRPNRGAVVA 86 Query: 66 PITVEELEEIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFG 125 +++E +I R +E I + A NAT + + + MV + S G + Sbjct: 87 SPSIDEARQILFARRTVERAITELATDNATAERLAELREMVVQEQSSFARGDRGAGIRLS 146 Query: 126 FEFHDYLSEI---SGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVE 182 EFH L+E+ + L +F+R L + +L +Y S G + +++EH+ IL I + Sbjct: 147 GEFHLKLAEMARNAPLVSFQRSL--VSQTSLIIAQYES--GGRSHCSFDEHNEILDAIEK 202 Query: 183 RDEEGAEKVMQDHI 196 D+E A +M H+ Sbjct: 203 GDKERAVTLMMHHM 216 >RSp0436 [K] COG1802 Transcriptional regulators Length = 205 Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 94/186 (50%), Gaps = 7/186 (3%) Query: 14 IIDNELKPGQNVHEESLAALLGVSRTPLREAIQRLENEDFLVRQPNGRLKVAPITVEELE 73 I++ E+ PG+ + E A LG SRTP+R A+ RLE + + R+ G + V P+ ++E+E Sbjct: 2 ILNMEIGPGERLTERWAEAQLGASRTPVRAALLRLETDGLICREGRGWM-VTPLDIQEIE 60 Query: 74 EIFLVRGMLEGHIAKNAAKNATPQDIQHMTAMVEKTNQSLYLGSDKDALPFGFEFHDYLS 133 ++F+ R +LE + AAK+A + + + A +E S ++A G EFH L+ Sbjct: 61 QLFVYREVLEVAAIQLAAKHANIEALDRLEAALEACRPGT---STREAHQLGTEFHVQLA 117 Query: 134 EISGLHTFERILSQLRDHTLRYCRYVSLHGEWNSQAYEEHSLILQRIVERDEEGAEKVMQ 193 ++ R ++ D R R L Q ++EH +L + E D A ++ Sbjct: 118 ALAANDFIARGVA---DAMTRLSRARWLDTTPEHQGWDEHRAVLAALREGDAAKASALVS 174 Query: 194 DHISNS 199 H+ +S Sbjct: 175 QHLRDS 180 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,493,452 Number of extensions: 648565 Number of successful extensions: 1536 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 1550 Number of HSP's successfully gapped: 83 Length of query: 216 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 114 Effective length of database: 26,614,363 Effective search space: 3034037382 Effective search space used: 3034037382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 113 (48.1 bits)