BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0013.p (307 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2353 [CR] COG0604 NADPH:quinone reductase and related Zn-depen... 234 2e-61 all0412 [CR] COG0604 NADPH:quinone reductase and related Zn-depe... 139 4e-33 mll2116 [CR] COG0604 NADPH:quinone reductase and related Zn-depe... 137 3e-32 lin0622 [CR] COG0604 NADPH:quinone reductase and related Zn-depe... 120 2e-27 MA0773 [CR] COG0604 NADPH:quinone reductase and related Zn-depen... 119 5e-27 >CC2353 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases Length = 346 Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 11/327 (3%), Positives = 46/327 (14%), Gaps = 26/327 (7%) Query: 1 MKAMVCSKYGSPENLHLIEMEKPVPKRKDLLIKVHASTVTAGDIRVRTFKSPVLLWLPMR 60 M+ + + + + A I + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 LVLGLSKPRKPXXXXXXXXXXXXXXXXXTRFKPGDPVYALTGMRFGG-HAEYACLSEDAM 119 + + + + Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKG---IRPDQALDRKNIREALHDS 117 Query: 120 VSIKPANTTFEEAASTLFGGTTALYFLRK-ANIQKGQKVLIYGASGTVGTFALQLARHFG 178 + + T L L+ R+ G Sbjct: 118 LKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIG 177 Query: 179 AEVDGVCSTANLEWVKSLGASQVIDYTAEDCTQRGQQYDIIFDAVGKLPKAGCKKALKPN 238 + + I + + +++ V + Sbjct: 178 VSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG 237 Query: 239 GSYV--TVDGQGM-------------------AKVRLEDLQLLSELMEAGNIKSVIDRYY 277 + + + ++ + + Sbjct: 238 FGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVR 297 Query: 278 PLEQLAEAHRYVEQGHKKGSVVIRIGQ 304 +A + + + + Sbjct: 298 RQPFVASTLLGATTMDQLKTNIESLHL 324 >all0412 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases Length = 346 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 11/330 (3%), Positives = 45/330 (13%), Gaps = 42/330 (12%) Query: 1 MKAMVCSKYGSPENLHLIEMEKPVPKRKDLLIKVHASTVTAGDIRVRT-FKSPVLLWLPM 59 M+ + + + + A I + + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMY-PVPPRP 59 Query: 60 RLVLGLSKPRKPXXXXXXXXXXXXXXXXXTRFKPGDPVYALTGMRFGG--HAEYACLSED 117 + ++G + Sbjct: 60 ETQGLTET------------YVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALD- 106 Query: 118 AMVSIKPANTTFEEAAST-LFGGTTALYFLRKANIQKGQKVLIYGASGTVGTFALQLARH 176 + + + + + L K A L Sbjct: 107 RKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAE 166 Query: 177 FGAEVDGVCSTANLEWVKSLGASQVIDYTAEDCTQ------RGQQYDIIFDAVGKLPKAG 230 + + E + + + + ++ + Sbjct: 167 YQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYE 226 Query: 231 CKKALKPNGSYVTVDGQ------------GMAKVRLED----LQLLSELMEAGNIKSVID 274 + L + R + + Sbjct: 227 GVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGL 286 Query: 275 RYYPLEQLAEAHRYVEQGHK--KGSVVIRI 302 + + ++ Sbjct: 287 DPAQMALAFVRRQPFVASTLLGATTMDQLK 316 >mll2116 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases Length = 346 Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 17/345 (4%), Positives = 42/345 (12%), Gaps = 56/345 (16%) Query: 1 MKAMVCSKYGSPENLHLIEMEKPVPKRKDLLIKVHASTVTAGDIRVRT--FKSPVLLWLP 58 + L L M + V G + PV Sbjct: 2 QYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMY-PVPPRPE 60 Query: 59 MRLVLGLSKPRKPXXXXXXXXXXXXXXXXXTRFKPGDPVYALT-GMRFGGHAEYACLSED 117 L + V + G + A + Sbjct: 61 -TQGLT----------ETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRK- 108 Query: 118 AMVSIKPANTTFEEAASTLFGGTTALYFL-RKANIQKGQKVLIYGASGTVGTFALQLARH 176 + + + A + T Sbjct: 109 NIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQ 168 Query: 177 FGAEVDGVCSTANLEWVKSLGASQVIDYTAEDCTQRGQQYDIIFDAVGKLPKAGCKKALK 236 ++ + + + + Y ++ + + Sbjct: 169 RAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGV 228 Query: 237 PNGSYVTVDG---------QGMAKVRLEDLQLLSE------------------------- 262 +Y + L Sbjct: 229 ELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDP 288 Query: 263 -----LMEAGNIKSVIDRYYPLEQLAEAHRYVEQGHKKGSVVIRI 302 + V+ Sbjct: 289 AQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAE 333 >lin0622 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases Length = 346 Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 21/324 (6%), Positives = 54/324 (16%), Gaps = 31/324 (9%) Query: 1 MKAMVCSKYGSPENLHLIEMEKPVPKRKDLLIKVHASTVTAGDIRVRTFKSPVLLWLPMR 60 M+ + + + + A I + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 LVLGLSKPRKPXXXXXXXXXXXXXXXXXTRFKPGDPVYAL-TGMRFGGHAEYACLSEDAM 119 + + G L + Sbjct: 61 TQGLTE----------TYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQAL-DRKN 109 Query: 120 VSIKPANTTFEEAASTLFGGTTALYFL-RKANIQKGQKVLIYGASGTVGTFALQLARHFG 178 + ++ L + G + ++ LA + Sbjct: 110 IREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQR 169 Query: 179 AEVDGVCSTANLEWVKSLGASQVIDYTAEDCTQRGQQYDIIFDAVGKLPKAGCKKALKPN 238 A +N + + D Q + + ++ A + Sbjct: 170 AGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVE 229 Query: 239 G----SYVTVDGQGMAKVRL------------EDLQLLSELMEAGNIKSVIDRYYPLEQ- 281 G + +A I R + L+ Sbjct: 230 LLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGLDPA 289 Query: 282 -LAEAHRYVEQGHKKGSVVIRIGQ 304 +A A + + Sbjct: 290 QMALAFVRRQPFVASTLLGATTMD 313 >MA0773 [CR] COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases Length = 346 Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 11/320 (3%), Positives = 40/320 (12%), Gaps = 30/320 (9%) Query: 1 MKAMVCSKYGSPENLHLIEMEKPVPKRKDLLIKVHASTVTAGDIRVRTFKSPVLLWLPMR 60 M+ + + + + A I + ++ Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLI---DVAEMYPVPP 57 Query: 61 LVLGLSKPRKPXXXXXXXXXXXXXXXXXTRFKPGDPVYALTGMRFGGHAEYACLSEDAMV 120 + + + + + A+ Sbjct: 58 RPETQG----------LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD-QALD 106 Query: 121 SIKPANTTFEEAASTLFGGTTALYFLRK-ANIQKGQKVLIYGASGTVGTFALQLARHFGA 179 + K+ L Sbjct: 107 RKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAE 166 Query: 180 EVDGVCSTANLEWVKSLGASQVIDYTAEDCTQRGQQYDIIFDAVGKLPKAGCKKALKPNG 239 ++ + A+ ++ + Sbjct: 167 YQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYE 226 Query: 240 SYVT--------------VDGQG-MAKVRLEDLQLLSELMEAGNIKSVIDRYYPLEQLAE 284 A R + K+V + Sbjct: 227 GVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIARRHGL 286 Query: 285 AHRYVEQGHKKGSVVIRIGQ 304 + + + Sbjct: 287 DPAQMALAFVRRQPFVASTL 306 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,940,732 Number of extensions: 795768 Number of successful extensions: 2189 Number of sequences better than 1.0e-05: 105 Number of HSP's gapped: 2137 Number of HSP's successfully gapped: 105 Length of query: 307 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 201 Effective length of database: 26,153,027 Effective search space: 5256758427 Effective search space used: 5256758427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)