BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0534.0006.p (364 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PAE0579 [R] COG0535 Predicted Fe-S oxidoreductases 101 2e-21 Rv0693 [R] COG0535 Predicted Fe-S oxidoreductases 100 4e-21 MT0720 [R] COG0535 Predicted Fe-S oxidoreductases 100 4e-21 APE1652 [R] COG0535 Predicted Fe-S oxidoreductases 99 9e-21 AF1125 [R] COG0535 Predicted Fe-S oxidoreductases 86 8e-17 >PAE0579 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 0/341 (0%), Positives = 0/341 (0%), Gaps = 24/341 (7%) Query: 19 ITSNCNLRCLHCYNESGVLQ-SQIDKPTFMNIINALPDNPDTSITISGGEPTTHPEFWYF 77 N + + + G + + Sbjct: 42 QGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRP 101 Query: 78 MDELQKKHFGMVLVITNGTYITKEVAEKFASYKVA-IQLSLNGSRAEIHDQLCG-RGSFN 135 L +K+ L + + + + + + D Sbjct: 102 DQALDRKNIREALH-DSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT 160 Query: 136 KTMQGLDHLIEAGMSERILIRSVLTSFNKDDIVNLLNMVADKKIPQAEIAGLSSLGRSEN 195 I + + + + + L + Sbjct: 161 LDALAEYQRAGKIRY--IGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVG 218 Query: 196 NKNDLYLDILEKSALVQSL-EKNAEIVNLIDSGVKITLPDDFTGACPLLSGVTEEDDKIP 254 + +E A + Sbjct: 219 LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYV 278 Query: 255 LTP-------RIDSSGNVFLCQLFTDVQYAIGNVNQASLPSMLQSPEMINLI---RFFQV 304 + V F +G L + ++S + + Sbjct: 279 DIARRHGLDPAQMALAFVRRQP-FVAS-TLLGATTMDQLKTNIESLHLELSEDVLAEIE- 335 Query: 305 GQTYMNKCQSCIWNHNCGKGCVAIAVANGGSIQDTDGCCKV 345 Sbjct: 336 ---- 372 >Rv0693 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 19/329 (5%), Positives = 54/329 (16%), Gaps = 15/329 (4%) Query: 18 EITSNCNLRCLHCYNESGVLQ-SQIDKPTFMNIINALPDNPDTSITISGGEPTTHPEFWY 76 E S + Y + + + + + +T + + + + Sbjct: 25 EQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLII 84 Query: 77 FMDELQKKHFGMVLVITNGTYITKEVAEKFASYK-VAIQLSLNGSRAEIHDQLCGRGSFN 135 I + ++ + +Q Q Sbjct: 85 ASKVSGPSRNN-DKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGK 143 Query: 136 KTMQGLDHLIEAGMSERILIRSVLTSFNKDDIVNLLNMVADKKIPQAEIAGLSSLGRSEN 195 D + + L + + Sbjct: 144 LGYSWTDSAPAVSLLD-TLDALAEYQRAGKIR-YIGVSNETAFGVMRYLHLADKHDLPRI 201 Query: 196 NKNDLYLDILEKSALVQSLEKNAEIVNLIDSGVKITLPDDFTGACPLLSGVTEEDDKIPL 255 +L +S V E + + + + TG + Sbjct: 202 VTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG-FGTLTGKYLNGA-KPAGARNTLF 259 Query: 256 TPRIDSSGNVFLCQLFTDVQYAIGNV-NQASLPSMLQSPEMINLIRFFQVGQTYMNKCQS 314 + Y + M + + Sbjct: 260 ---SRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLL----GATTM 312 Query: 315 CIWNHNCGKGCVAIAVANGGSIQDTDGCC 343 N + ++ I+ Sbjct: 313 DQLKTNIESLHLELSEDVLAEIEAVHQVY 341 >MT0720 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 19/329 (5%), Positives = 54/329 (16%), Gaps = 15/329 (4%) Query: 18 EITSNCNLRCLHCYNESGVLQ-SQIDKPTFMNIINALPDNPDTSITISGGEPTTHPEFWY 76 E S + Y + + + + + +T + + + + Sbjct: 25 EQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLII 84 Query: 77 FMDELQKKHFGMVLVITNGTYITKEVAEKFASYK-VAIQLSLNGSRAEIHDQLCGRGSFN 135 I + ++ + +Q Q Sbjct: 85 ASKVSGPSRNN-DKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGK 143 Query: 136 KTMQGLDHLIEAGMSERILIRSVLTSFNKDDIVNLLNMVADKKIPQAEIAGLSSLGRSEN 195 D + + L + + Sbjct: 144 LGYSWTDSAPAVSLLD-TLDALAEYQRAGKIR-YIGVSNETAFGVMRYLHLADKHDLPRI 201 Query: 196 NKNDLYLDILEKSALVQSLEKNAEIVNLIDSGVKITLPDDFTGACPLLSGVTEEDDKIPL 255 +L +S V E + + + + TG + Sbjct: 202 VTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLG-FGTLTGKYLNGA-KPAGARNTLF 259 Query: 256 TPRIDSSGNVFLCQLFTDVQYAIGNV-NQASLPSMLQSPEMINLIRFFQVGQTYMNKCQS 314 + Y + M + + Sbjct: 260 ---SRFTRYSGEQTQKAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTLL----GATTM 312 Query: 315 CIWNHNCGKGCVAIAVANGGSIQDTDGCC 343 N + ++ I+ Sbjct: 313 DQLKTNIESLHLELSEDVLAEIEAVHQVY 341 >APE1652 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 99.4 bits (246), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 0/347 (0%), Positives = 0/347 (0%), Gaps = 30/347 (8%) Query: 16 YLEITSNCNLRCLHCYNESGV--LQSQIDKPTFMNIINALPDNPDTSITISGGEPTTHPE 73 Y + Y Q + + + G + + Sbjct: 38 YAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDK 97 Query: 74 FWYFMDELQKKHFGMVLVITNGTYITKEVAEKFASYKVA-IQLSLNGSRAEIHDQLCGR- 131 L +K+ L + T + + + Sbjct: 98 GIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSL 157 Query: 132 GSFNKTMQGLDHLIEAGMSERILIRSVLTSFNKDDIVNLLNMVADKKIPQAEIAGLSSLG 191 + + + + + + + Q + L+ Sbjct: 158 LDTLDALAEYQRAGKIRYI--GVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSF 215 Query: 192 RSENN----KNDLY--LD-ILEKSALVQS------LEKNAEIVNLIDSGVKITLPDDFTG 238 + L L + + Sbjct: 216 EVGLAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGE--QTQ-- 271 Query: 239 ACPLLSGVTEEDDKIPLTPRIDSSGNVFLCQLFTDVQYAIGNVNQASLPSMLQSPEMINL 298 + + V ++ + + + + ++ L Sbjct: 272 -KAVAAYVDIARRHGLDPAQMALAFVRRQPFVASTL--LGATTMDQLKTNIESLHL--EL 326 Query: 299 IRFFQVGQTYMN--KCQSCIWNHNCGKGCVAIAVANGGSIQDTDGCC 343 ++ Sbjct: 327 SEDVLAEIEAVHQV 373 >AF1125 [R] COG0535 Predicted Fe-S oxidoreductases Length = 346 Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 0/323 (0%), Positives = 0/323 (0%), Gaps = 37/323 (11%) Query: 19 ITSNCNLRCLHCYNESGVLQSQIDKPTFMNIINALPDNPDTSITISGGEPTTHPEFWYFM 78 + + + E+ L + + ++ + Sbjct: 46 LIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQAL 105 Query: 79 DELQKKHFGMVLVITNGTYITKEVAEKFASYKVAIQLSLNGSRAEIHDQLCG-RGSFNKT 137 D + + ++ + + D Sbjct: 106 DRKNIREALHDSL-KRLQTDYLDLYQVHWPQRP-TNCFGKLG-YSWTDSAPAVSLLDTLD 162 Query: 138 MQGLDHLIEAGMSERILIRSVLTSFNKDDIVNLLNMVADKKIPQAEIAGLSSLGRSENNK 197 S T+F ++L + +I + E Sbjct: 163 ALAEYQRAGKIRYI---GVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFE-VG 218 Query: 198 NDLYLDILEKSALVQSLEKNAEIVNLIDSGVKITLPDDFTGACPLLSGVTEED-DKIPLT 256 + + + + L Sbjct: 219 LAEVSQ--YEGVELLAYSCLGF-----GTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQ 271 Query: 257 ----------------PRIDSSGNVFLCQLFTDVQYAIGNVNQASLPSMLQSPEMINLIR 300 P + V +G L + ++S + Sbjct: 272 KAVAAYVDIARRHGLDPAQMALAFVRRQPFVAS--TLLGATTMDQLKTNIESLH--LELS 327 Query: 301 FFQVGQTYM-NKCQSCIWNHNCG 322 + + Sbjct: 328 EDVLAEIEAV 350 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 26,487,482 Number of extensions: 1111895 Number of successful extensions: 2585 Number of sequences better than 1.0e-05: 46 Number of HSP's gapped: 2574 Number of HSP's successfully gapped: 46 Length of query: 364 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 256 Effective length of database: 25,922,359 Effective search space: 6636123904 Effective search space used: 6636123904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)