BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0006.p (322 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 375 e-104 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 252 5e-67 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 238 8e-63 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 231 1e-60 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 218 1e-56 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/298 (61%), Positives = 230/298 (77%), Gaps = 1/298 (0%) Query: 24 SLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSPIKGILGSEWVGFYNFNK 83 SL +KK L LM P L+LT IFKY PMYG +IAFKD++P+KGILGS+W+GF F K Sbjct: 9 SLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTK 68 Query: 84 FLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSAIKKNIQLFLYAPNFISV 143 F+SSPNF ++ NTLKLS +GL+L F PI+LA+MLNQ+ +KK IQL LYAPNFISV Sbjct: 69 FISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISV 128 Query: 144 VVVVGMLFIFLSPTGPINQLLTWATGEPVMFMSRPEYFRWIYILSDIWTSAGWASIIYVA 203 VV+VGM+F+F S GPIN L+ G F++ P++FR +YI S IW GWAS +Y A Sbjct: 129 VVIVGMIFLFFSVGGPINNFLS-MFGMKADFLTNPDFFRPLYIFSGIWQGMGWASTLYTA 187 Query: 204 ALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIVFILAAGGIMSIGFEKAYLMQT 263 L NVDP L AA LDGAN+ QRI HID+P ++PIM I F+LAAGGIM++G+EKA+LMQT Sbjct: 188 TLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQT 247 Query: 264 ATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINVVLLITVNFIVKKLNEGDGL 321 + NLPTSEII TYVYK+GL SGDY+YS AVGLFN++INVVLL+ VN IVK++N G+G+ Sbjct: 248 SLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGEGI 305 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 252 bits (644), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 135/324 (41%), Positives = 207/324 (63%), Gaps = 4/324 (1%) Query: 2 EAKALQNTIKANAGSTVPRS--SGSLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAII 59 +A Q +A ++P+ L + ++ +LYLM+ P L+ LIFKY PM+G II Sbjct: 3 QASVEQALPIESAAPSIPKKVRRQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLII 62 Query: 60 AFKDFSPIKGILGSEWVGFYNFNKFLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALML 119 AF+D+ P G+ GSEWVGF +F + + P F + NTL L + LI FPVPI+LA++L Sbjct: 63 AFQDYQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLL 122 Query: 120 NQVRKSAIKKNIQLFLYAPNFISVVVVVGMLFI-FLSPTGPINQLLTWATGEPVMFMSRP 178 N++R K+ +Q +Y P+F+S V+VV + ++ F + G IN+++ TG+ V F+ Sbjct: 123 NEIRLMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTDGGVINEIIYSITGKNVNFLMSE 182 Query: 179 EYFRWIYILSDIWTSAGWASIIYVAALANVDPELHNAANLDGANLLQRIRHIDLPTIRPI 238 ++FR +YIL IW AGWA+IIY AA+A +DP L+ AA +DGAN ++I HI LP IR + Sbjct: 183 DWFRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSV 242 Query: 239 MAIVFILAAGGIMSIGFEKAYLMQTATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNS 298 + ++ IL G I+ +GFE +LM A N +EI TYVY GL+ G ++YS AVG F S Sbjct: 243 IVVLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKS 302 Query: 299 LINVVLLITVNFIVKKLNEGDGLY 322 ++ +++++ N++ KK E +G+Y Sbjct: 303 IVGLIMVMLANWLAKKFGE-EGVY 325 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 238 bits (608), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 123/277 (44%), Positives = 185/277 (66%), Gaps = 2/277 (0%) Query: 47 LIFKYGPMYGAIIAFKDFSPIKGILGSEWVGFYNFNKFLSSPNFEVIFMNTLKLSFFGLI 106 LIFKY PM+G +IAFKD+SP G SEWVGF F F +P+F + NTL L+ L+ Sbjct: 43 LIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLL 102 Query: 107 LSFPVPILLALMLNQVRKSAIKKNIQLFLYAPNFISVVVVVGMLFIFLS-PTGPINQLLT 165 +FP P++LAL+LN+VRK+ K+ IQ F+Y P+F+S +VV + F+F + TG IN+L+ Sbjct: 103 FAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKLIM 162 Query: 166 WATGEPVMFMSRPEYFRWIYILSDIWTSAGWASIIYVAALANVDPELHNAANLDGANLLQ 225 TGE + F+S ++FR + ++ IW GW +I+++AALA VD E + AA +DGA + Sbjct: 163 SLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFR 222 Query: 226 RIRHIDLPTIRPIMAIVFILAAGGIMSIGFEKAYLMQTATNLPTSEIIPTYVYKIGLQSG 285 R+ HI LP IR + ++ IL G +++GFE+ YLM + N ++I TYVY +G+ G Sbjct: 223 RMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQG 282 Query: 286 DYAYSAAVGLFNSLINVVLLITVNFIVKKLNEGDGLY 322 Y+YS AVGLF S++ ++L+ N+I KK ++ +GL+ Sbjct: 283 AYSYSTAVGLFKSVVGIILIFGANYIAKKFDQ-EGLF 318 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 231 bits (588), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 125/314 (39%), Positives = 189/314 (60%), Gaps = 6/314 (1%) Query: 8 NTIKANAGSTVP-RSSGSLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIAFKDFSP 66 T+K A S + + +L +K+ +LYLM P + L+F Y P++G +AF++F P Sbjct: 2 ETVKEKAHSKIRVQRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRP 61 Query: 67 IKGILGSEWVGFYNFNKFLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLNQVRKSA 126 EWVG +F + F ++ NTL +S GLI+ F +PIL A++LN+VR Sbjct: 62 GLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMV 121 Query: 127 IKKNIQLFLYAPNFISVVVVVGMLFIFLSPTGPI-NQLLTWATG---EPVMFMSRPEYFR 182 K+ +Q Y P+F+S VVV G++ LS G I NQLL A G +PV FM++ E+F Sbjct: 122 FKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLM-AFGFVDQPVQFMAKGEWFW 180 Query: 183 WIYILSDIWTSAGWASIIYVAALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIMAIV 242 I LSD+W GW SII++AA+A +DP+L+ AA +DGA+ ++I HI LP IRP + ++ Sbjct: 181 VIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVI 240 Query: 243 FILAAGGIMSIGFEKAYLMQTATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSLINV 302 IL+ G +M+IGFEK +L+ + SE++ Y GL G Y+Y A+G+FNS++ + Sbjct: 241 LILSIGHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCI 300 Query: 303 VLLITVNFIVKKLN 316 +LL N I K+ Sbjct: 301 ILLFLANGIFKRFT 314 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 218 bits (555), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 192/307 (62%), Gaps = 6/307 (1%) Query: 1 MEAKALQNTIKANAGSTVPRSSGSLLNFVKKHYFLYLMLAPALILTLIFKYGPMYGAIIA 60 ME++A + +NA + + NF ++ + L+++L PAL+L LIF+YGPM+G ++A Sbjct: 1 MESQA----VTSNAKTVERKLKKQKWNF-RRTWQLHVLLIPALVLALIFQYGPMFGIVMA 55 Query: 61 FKDFSPIKGILGSEWVGFYNFNKFLSSPNFEVIFMNTLKLSFFGLILSFPVPILLALMLN 120 F+D+ P G GSEWVG +F + + NTL +S +I VPI++AL+LN Sbjct: 56 FQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLN 115 Query: 121 QVRKSAIKKNIQLFLYAPNFISVVVVVGMLFIFLSPTGPI-NQLLTWATGEPVMFMSRPE 179 ++ + +K+ +Q +Y P F+S V++ G+L LSP G I NQ L +P+ F+ + Sbjct: 116 EMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSND 175 Query: 180 YFRWIYILSDIWTSAGWASIIYVAALANVDPELHNAANLDGANLLQRIRHIDLPTIRPIM 239 +FR ++SD+W G+ +I+++AA+ V+P L+ AA +DGAN ++ HI LP + PI+ Sbjct: 176 WFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPII 235 Query: 240 AIVFILAAGGIMSIGFEKAYLMQTATNLPTSEIIPTYVYKIGLQSGDYAYSAAVGLFNSL 299 +V L+ G I++ GF++ + + T +II TYVY++ L +GD++Y AVGLF SL Sbjct: 236 IVVATLSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSL 295 Query: 300 INVVLLI 306 I++VL+I Sbjct: 296 ISLVLII 302 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.142 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,839,139 Number of extensions: 930228 Number of successful extensions: 2860 Number of sequences better than 1.0e-05: 142 Number of HSP's gapped: 2738 Number of HSP's successfully gapped: 142 Length of query: 322 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 216 Effective length of database: 26,153,027 Effective search space: 5649053832 Effective search space used: 5649053832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)