BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0533.0005.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 326 3e-89 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 184 2e-46 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 176 4e-44 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 172 4e-43 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 171 9e-43 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 326 bits (836), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 158/256 (61%), Positives = 199/256 (77%) Query: 38 SFMDPSVLLSHGLSFKISDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAG 97 SFMDP VL+S G+SF +DW+++GY+ + ++ +++RGF N++ YS FA LTVL+S+ Sbjct: 49 SFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTA 108 Query: 98 YALSDDRLKGRXXXXXXXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIIL 157 Y LS L GR GGLVPTYLLVK LG+L+T WA+I+PGAVNVWNIIL Sbjct: 109 YPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIIL 168 Query: 158 SRTFFKGVPNELREAANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIY 217 +R +F+G+P EL EAA +DGA++ +IF I+LPL+KPI+FVL LYAFVGQWNSYFDAMIY Sbjct: 169 ARAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIY 228 Query: 218 LDNPNLHPLQLVLRSILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYP 277 + +PNL PLQLVLR ILIQ+Q MI Q AM EMKRL+E+IKYA IV+SSLPLI+MYP Sbjct: 229 IKDPNLEPLQLVLRKILIQSQPGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYP 288 Query: 278 FFQKYFEKGVMLGSLK 293 FFQKYF+KG+M GSLK Sbjct: 289 FFQKYFDKGIMAGSLK 304 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 146/239 (61%), Gaps = 3/239 (1%) Query: 55 SDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAGYALSDDRLKGRXXXXXX 114 ++LD YK + + P +R G ++F +V + + + Y L+ +KGR Sbjct: 59 KTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNL 118 Query: 115 XXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIILSRTFFKGVPNELREAAN 174 GG++PTYL+VK+LGLLDT WA+I+P A+N +N+I+ + FF+ +P EL E+A Sbjct: 119 VIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAK 178 Query: 175 VDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIYLDNPNLHPLQLVLRSIL 234 +DG SE +F I LPLSKP+I AL+ VG WN +F A++Y+++ PLQ+VLR + Sbjct: 179 IDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVT 238 Query: 235 IQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYPFFQKYFEKGVMLGSLK 293 I + + ++ M + IK A IV+++LP++ +YPF QK+F KG+++GS+K Sbjct: 239 ILSDLTA---TNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 150/241 (62%), Gaps = 7/241 (2%) Query: 56 DWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAGYALS-DDR-LKGRXXXXX 113 D++LD Y+ + N IR F +V V ++++ +CA YALS +DR KGR Sbjct: 56 DFTLDAYERTIANDNFIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIW 115 Query: 114 XXXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIILSRTFFK-GVPNELREA 172 GGLVPTY++V LGL +T+WA+++P A+N +N+IL FF+ VP L E+ Sbjct: 116 FFVITMLFNGGLVPTYMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEES 175 Query: 173 ANVDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIYLDNPNLHPLQLVLRS 232 A +DGA+ ++IF+ I LP+S P I ++L+ V WNS+FD MIY ++ +PLQ L++ Sbjct: 176 AFIDGANHFQIFLKIYLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQT 235 Query: 233 ILIQNQVDPGMISDQLAMAEMKRLSEIIKYAAIVVSSLPLIIMYPFFQKYFEKGVMLGSL 292 I++Q D I+D + + + ++ A I +++LP++I+YPF QKYF KG++LG+ Sbjct: 236 IVVQQ--DFSQITDAETLRNLSQ--RTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAE 291 Query: 293 K 293 K Sbjct: 292 K 292 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 172 bits (437), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 150/243 (61%), Gaps = 10/243 (4%) Query: 55 SDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAGYALSDDRLKGRXXXXXX 114 + +SLD Y+ I + + + +VF +V +++ +S Y LS L GR Sbjct: 49 TTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFL 108 Query: 115 XXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIILSRTFFKGVPNELREAAN 174 GG++PT+L+VK+LGLLD+ WA+I+P A+N +N+I+ + FF+ +P+ L E+A Sbjct: 109 VVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAK 168 Query: 175 VDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIYLDNPNLHPLQLVLRSIL 234 +DG ++ IF IVLPLS P I ++L+ V WN+Y A++YL++ P+Q++LR I+ Sbjct: 169 IDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIV 228 Query: 235 IQNQVDPGMISDQLAMAEMKRLS----EIIKYAAIVVSSLPLIIMYPFFQKYFEKGVMLG 290 I V GM D M+EM S + IK A IVV+++P++++YPF QK+F KG +LG Sbjct: 229 I---VSSGMQGD---MSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLG 282 Query: 291 SLK 293 S+K Sbjct: 283 SVK 285 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 171 bits (434), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 88/241 (36%), Positives = 146/241 (60%), Gaps = 5/241 (2%) Query: 55 SDWSLDGYKMILTNPAMIRGFGNAVFYSVAFAILTVLVSICAGYALSDDRLKGRXXXXXX 114 + +SLD Y+ I + + R ++ +V ++ ++ Y LS L GR Sbjct: 55 TTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFL 114 Query: 115 XXXXXXXXGGLVPTYLLVKNLGLLDTVWAVIIPGAVNVWNIILSRTFFKGVPNELREAAN 174 GG++PT+L+V++LGLLDT WA+IIP A+N +N+I+ + FF+ +P L E+A Sbjct: 115 VVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAK 174 Query: 175 VDGASEWRIFIGIVLPLSKPIIFVLALYAFVGQWNSYFDAMIYLDNPNLHPLQLVLRSIL 234 +DG ++ IF IV PLS P I ++L+ V WN++ A++YL++ ++ P+Q++LR I+ Sbjct: 175 IDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIV 234 Query: 235 IQNQVDPGMISD--QLAMAEMKRLSEIIKYAAIVVSSLPLIIMYPFFQKYFEKGVMLGSL 292 I + GM D +L + + IK A IVV+++P++I+YPF QK+F KG +LGS+ Sbjct: 235 IMSS---GMQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSV 291 Query: 293 K 293 K Sbjct: 292 K 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.143 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,363,223 Number of extensions: 721619 Number of successful extensions: 2421 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 2233 Number of HSP's successfully gapped: 141 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)