BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0532.0010.p
         (63 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

all1684 [L] COG0675 Transposase and inactivated derivatives            57   6e-09
STM1831 [G] COG3715 Phosphotransferase system, mannose/fructose/...    56   1e-08
TM1026 [L] COG0675 Transposase and inactivated derivatives             55   4e-08
TM0776 [L] COG0675 Transposase and inactivated derivatives             52   1e-07
TM0047 [L] COG0675 Transposase and inactivated derivatives             52   2e-07

>all1684 [L] COG0675 Transposase and inactivated derivatives
          Length = 397

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 3   GIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCPCGFHTHRDKVGAMNI-------IHAPV 55
           G+KVE     Y+SQ CPSC   +K  +R Y C CGF  HRD VG +NI          PV
Sbjct: 304 GMKVEIQCERYSSQVCPSCGQRHKPKNRTYKCKCGFEFHRDGVGCVNIRRKYLGCFDVPV 363

Query: 56  IG 57
           +G
Sbjct: 364 VG 365


>STM1831 [G] COG3715 Phosphotransferase system,
           mannose/fructose/N-acetylgalactosamine-specific
           component IIC
          Length = 266

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 0/49 (0%), Positives = 0/49 (0%), Gaps = 1/49 (2%)

Query: 3   GIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCP-CGFHTHRDKVGAMNI 50
                                                            
Sbjct: 315                                                   363


>TM1026 [L] COG0675 Transposase and inactivated derivatives
          Length = 402

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 3   GIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCP-CGFHTHRDKVGAMNI 50
           GI+V+ ++ A TS+ CP C   NK   R+Y C  CGF  HRD VGA+NI
Sbjct: 315 GIEVKLISEANTSKTCPVCGAKNKPNGRRYHCKTCGFEYHRDGVGAINI 363


>TM0776 [L] COG0675 Transposase and inactivated derivatives
          Length = 402

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 3   GIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSC-PCGFHTHRDKVGAMNI 50
           GI+V+ ++ A TS+ CP C   N    R+Y C  CGF  HRD VGA+NI
Sbjct: 315 GIEVKLISEANTSKTCPVCGAKNNPNGRRYHCKACGFEYHRDGVGAINI 363


>TM0047 [L] COG0675 Transposase and inactivated derivatives
          Length = 405

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 1   MAGIKVEYVNPAYTSQKCPSCSTLNKAIDRKYSCP-CGFHTHRDKVGAMNI 50
           + GI+V  ++ A+TS+ CP C T N+   R Y C  CGF  HRD VGA+NI
Sbjct: 315 IFGIEVVRISEAHTSKTCPVCGTQNRPSGRNYKCAGCGFEYHRDGVGAINI 365


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.132    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,600,753
Number of extensions: 121328
Number of successful extensions: 171
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 5
Length of query: 63
Length of database: 38,378,431
Length adjustment: 35
Effective length of query: 28
Effective length of database: 34,341,741
Effective search space: 961568748
Effective search space used: 961568748
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)