BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0531.0017.p
         (143 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA0699 [S] COG3610 Uncharacterized conserved protein                  108   4e-24
SA0542 [S] COG3610 Uncharacterized conserved protein                   97   8e-21

>SA0699 [S] COG3610 Uncharacterized conserved protein
          Length = 164

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 2   ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLY-LQLDEKWDXXXXXXXXXXXX 60
           +     SFI+   F I+FNAP R LV CGF G + W +Y L +D ++             
Sbjct: 5   LFHFTISFISTVLFSIIFNAPKRLLVACGFVGAIAWTIYQLTVDLEFGKVGASFLGSLIL 64

Query: 61  XXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSGA 120
             +S   +R +K PVIIF V GIIPLVPGG AY A R  V ND   A+   ++  L+SGA
Sbjct: 65  GLMSHTMSRRYKRPVIIFIVPGIIPLVPGGAAYQATRFLVSNDYTSAVNTFLEVTLISGA 124

Query: 121 IATGLVLSEVLGQMFRR 137
           IA G+++SE+L  ++ R
Sbjct: 125 IAFGILVSEILYYLYTR 141


>SA0542 [S] COG3610 Uncharacterized conserved protein
          Length = 150

 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 2/135 (1%)

Query: 2   ILQLITSFIAAATFCILFNAPVRALVQCGFAGMVGWMLYLQLDEKWDXXXXXXXX--XXX 59
           IL  I SF+A+  FC++F+AP +  + CGF G  GWM+Y      ++             
Sbjct: 4   ILNFIFSFLASMFFCVIFDAPRKLYLSCGFVGTCGWMVYTLFFNGFNVHTIYSSFFGSLA 63

Query: 60  XXXISQFFARSFKMPVIIFSVGGIIPLVPGGLAYDAMRKFVENDNNLAIQFAVQALLLSG 119
              +S + AR  K P IIF V GIIPLVPGGLAYDA +  V  + + AI   ++  L++G
Sbjct: 64  LGLLSHYMARKQKEPAIIFMVTGIIPLVPGGLAYDATKNLVLLNFSTAINTMLEVTLIAG 123

Query: 120 AIATGLVLSEVLGQM 134
           AIA GL+ ++ + ++
Sbjct: 124 AIALGLLFADQISKL 138


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.331    0.143    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,629,482
Number of extensions: 262585
Number of successful extensions: 694
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 38,378,431
Length adjustment: 96
Effective length of query: 47
Effective length of database: 27,306,367
Effective search space: 1283399249
Effective search space used: 1283399249
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)