BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0531.0012.p
         (670 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA121 [S] COG3533 Uncharacterized protein conserved in bacteria     450   e-126

>AGpA121 [S] COG3533 Uncharacterized protein conserved in bacteria
          Length = 435

 Score =  450 bits (1158), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 0/479 (0%), Positives = 0/479 (0%), Gaps = 19/479 (3%)

Query: 88  VFQDSDLAKWLEAVGYSLRLKRDPELEARADAVIDLVAAAQQPDGYLNTYFTVKEPGKRW 147
                           S   +         +  +  +A   +   +  +    +      
Sbjct: 83  EVSKLTSIPDSTLKLMSSEGRGPVPGRLENNHRVYTLAQINELREFFASQKPSEALRFLP 142

Query: 148 TNLQDCHELYCAGHFIEAAVAYYEATGKDKLLNTMRRMVDHISSVFGPEEGKLKGYDGHQ 207
              +  H    A    +   A             ++        +              +
Sbjct: 143 RRREGEHLQVVAIANFKGGSAKTTTCVHLAHYLALQGYRVLALDLDPQASLSALFGAQPE 202

Query: 208 EIELALVKLYRLTGEEQYLKLSSFFIDQRGQEPN---FLRQEWEARDRVTHWSSSPAGSI 264
               A   +Y     +   +     I ++                         +P    
Sbjct: 203 FDVGANETIYAALRYDDAERRPIRDIIRKTYFDGIDLIPGNLEVMEYE----HETPRVLA 258

Query: 265 DLKYFQAHIPVREQTEAAGHSVRAVYMYTAMADLAALTGDRALHDACVRLWDNMTGKQMY 324
                 A    R +   +        +              A++ A   +          
Sbjct: 259 QKSGSGAIFFERLKLALSEVEQDYDIVILDTPPSLGFLTLSAIYAATSMIITVHPAMLDV 318

Query: 325 ITGGIGSTHKGEAFTFDYDLPNDTVYAETCASIGLIFFARRMLELEPDARYADVMERALY 384
            +        G+  +   +             +                         L 
Sbjct: 319 ASMSQFLLMMGDLISVLNESGAQLDQDFIRYLVTRHDPNDAPQSQVVAMMRHLFGSDVLL 378

Query: 385 NNVLGSMAQDGRHYFYVNPLEVWPQACTCNPDKHHVKSERQGWFGCACCPPNVARLLTSM 444
             ++ S A +       +  E                   +     A    +        
Sbjct: 379 PTLIESTAVEAAGLAKRSIYE--------LEMGQI----GRDTHKRAREAVDAVNEAILK 426

Query: 445 NQYIYTVHGDTLYTNLYIGSELNMTLGGTAVAVSQQSNYPWEGTVTLKVDPAEAAEFGIA 504
                                                                       
Sbjct: 427                                                              486

Query: 505 LRIPSWSSSAEIRVGGEKLSLDENVEQGYCVIRRVWNAGDTIELKLSMEAHRVYAHPEL 563
                                                                      
Sbjct: 487                                                             545


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 52,034,608
Number of extensions: 2162152
Number of successful extensions: 3344
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3342
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 557
Effective length of database: 25,345,689
Effective search space: 14117548773
Effective search space used: 14117548773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 119 (50.4 bits)