BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0531.0009.p
         (723 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A     1025   0.0  

>STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A
          Length = 427

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 0/727 (0%), Positives = 0/727 (0%), Gaps = 4/727 (0%)

Query: 1   MPVKRDLDFYECRHGLGYTSITGERNGISVNQLAFVPMGHNAEVHRLVVKNTGSAKKSVK 60
             +   L        + +      + G  +     +     A +  +           + 
Sbjct: 87  PLLHIYLLGVRIDANVMHGIWQMTQQGDPLTAAMVLFCVVGAPLILVFSIAYLWFGSLLG 146

Query: 61  LFSFAEFCLWNAQDDMTNFQRNLSTGEVEVKDSVIYHKTEYRERRNHYAFYSVNKPIDGF 120
           +       +     +       L    V       Y   +       +    V   +   
Sbjct: 147 MNLRPVLLMLEKLKEWVMLDIYLVGIGVASIKVQDYAFLQPGIGLLAFVSLVVLSILTMI 206

Query: 121 DTDRESFLGMYNGLDNPQAVAAGEXXXXXXX---XXGSHALNITLEPGEEQSFIFVLGYI 177
             + E     +      Q                   +                  +   
Sbjct: 207 HLNVEQLWERFYPQRPAQRADERLRVCLGCHFSGYPDAKGRCPRCHIPLRLRRKQSIQKC 266

Query: 178 ENPEDEKWEALNVINKKPALAVIEQFXXXXXXXXXXXXXXXHWDNLLSKYQIQSGDEKLN 237
                     L   N  P   +                     +  ++     +      
Sbjct: 267 WAALLASIVFLLPANLLPISVIYINGGRQEDTILSGIMSLASSNIAVAAVVFIASILVPF 326

Query: 238 RMVNIWNPYQCMVTFNMSRSASYFESGIGRGMGFRDSNQDLLGFVHQIPERARERILDIA 297
             V +       + F   +        +         +   L  +           +   
Sbjct: 327 TKVIVMFTLLLSIHFKCQQGLRTRILLLRLVTWIGRWSMLDLFVISLTMSLINRDQILAF 386

Query: 298 ATQFEDGSAYHQYQPLTKKGNNEVGSGFNDDPLWLISGTAAYIKETGDYSILDEQVPFDS 357
                                                                       
Sbjct: 387                                                              446

Query: 358 NPDNTATLFEHLKRSFEHVTNNLGPHGLPLIGRADWNDCLNLNCFSTEPGESFQTTEN-I 416
                                                                       
Sbjct: 447                                                              506

Query: 417 AGGIAESVFIAGLFVFVGPDYAEICRMRGLXXXXXXXXXKIDNMREITLTHGFDGDWFLR 476
                                                                       
Sbjct: 507                                                              566

Query: 477 AYDHYGDKVGSKENEEGQIFIEPQGICVMAGIGVEDGQAAKALTSVQERLDTKYGIVLQQ 536
                                                                       
Sbjct: 567                                                              626

Query: 537 PPYSKYYLNLGEISTYPPGYKENAGIFCHNNPWIMIAETVLGHGDRAFEIYKKIAPAYLE 596
                                                                       
Sbjct: 627                                                              686

Query: 597 DISEVHRMEPYVYSQMIAGKDAVRHGEAKNSWLTGTAAWNYVAITQSILGIQADFAGLKV 656
                                                                       
Sbjct: 687                                                              746

Query: 657 DPCIPAAWDSFEITRVFRGDTYVIQIKNPNHVSKGVASLTLDGTAVGGNIIVPVGDGAVH 716
                                                                       
Sbjct: 747                                                              806

Query: 717 HVVVELG 723
                  
Sbjct: 807         813


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.137    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 54,684,836
Number of extensions: 2321257
Number of successful extensions: 3466
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3464
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 38,378,431
Length adjustment: 114
Effective length of query: 609
Effective length of database: 25,230,355
Effective search space: 15365286195
Effective search space used: 15365286195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)