BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0531.0008.p
         (87 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A      121   3e-28

>STM1848 [S] COG2995 Uncharacterized paraquat-inducible protein A
          Length = 427

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 6/74 (8%), Positives = 16/74 (21%)

Query: 1  MKFGTFDDTRKEYVINTPKTPYPWINYLGNEQFFGLISNTAGGYTFYRDARMRRLTRYRY 60
          M   T   T  + +     +     ++        ++ +             R   + R 
Sbjct: 1  MALNTSHVTPTKKLTIRSISEALPRSHYQRCPECDMLFSLPEMSAHQSAYCPRCQAKIRD 60

Query: 61 NNIPLDTGGRYYYL 74
                T      +
Sbjct: 61 GRDWSLTRLTAMAV 74


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.146    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,806,933
Number of extensions: 305304
Number of successful extensions: 286
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 1
Length of query: 87
Length of database: 38,378,431
Length adjustment: 57
Effective length of query: 30
Effective length of database: 31,804,393
Effective search space: 954131790
Effective search space used: 954131790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)