BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0030.p (236 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3502 [K] COG2188 Transcriptional regulators 157 1e-38 STM3602 [K] COG2188 Transcriptional regulators 153 2e-37 BH3323 [K] COG2188 Transcriptional regulators 132 4e-31 BH0419 [K] COG2188 Transcriptional regulators 127 1e-29 BS_yvoA [K] COG2188 Transcriptional regulators 119 4e-27 >CAC3502 [K] COG2188 Transcriptional regulators Length = 237 Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 142/232 (61%), Gaps = 2/232 (0%) Query: 2 LDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNEG 61 L+ IATPLY+QL++KL+ EI G+ G +L E EL++ Y VS +TVR+A EL G Sbjct: 3 LNNTIATPLYKQLEKKLQQEIDSGKRPAGSRLPTENELSKAYNVSRVTVRKALAELSESG 62 Query: 62 LLEKRQGKGTFVAMAKYPKDL-NQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLE 120 LE++ GKGTFVA K + + N +L F+E K++ A+P AK++ L P ++++ Sbjct: 63 YLERKSGKGTFVAEKKLERGITNGVLGFSEMCKMMNAIPGAKIIKIALEEPSEKDIQKMS 122 Query: 121 LPPGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKS 180 L + + + R+R + P+++E N F +SFL EENL D SL+ IL E+ I + S Sbjct: 123 LNKDEKVLVLERVRYANGKPVLLELNKFPESFSFLFEENLTDASLYDIL-EQHNIILDHS 181 Query: 181 KRTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKY 232 ++T++I A +EA L +S+ PLL ++ +++ ++ I + Q+ G+K+ Sbjct: 182 RKTLDIVFADTKEAKTLGISRGYPLLRINSIIHNADNTITNLCQQLCIGDKF 233 >STM3602 [K] COG2188 Transcriptional regulators Length = 239 Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 139/234 (59%) Query: 3 DEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNEGL 62 D K A PLY+QL+ LK IA G KPG+++ E EL+ +++VS +TVR+A + L E L Sbjct: 6 DSKSAKPLYKQLEAALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRENL 65 Query: 63 LEKRQGKGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLELP 122 L + GKGTFV+ K+ + + I+SF+E + G P ++ + S ++ L + Sbjct: 66 LTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALLNMN 125 Query: 123 PGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKSKR 182 G + V I R+R D+ + +E + +++FLL+E+LN+HSL++ L+EK + + S++ Sbjct: 126 DGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRK 185 Query: 183 TIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKLHV 236 IE+ A+ + A YL V++ PL+L+ + N ++ V Q+I G+K + V Sbjct: 186 MIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDKIRFTV 239 >BH3323 [K] COG2188 Transcriptional regulators Length = 237 Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 136/228 (59%), Gaps = 5/228 (2%) Query: 9 PLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNEGLLEKRQG 68 PLY+QLK++L +I G LKPG+ L PE ELA+ + +S +TVR+A +EL NE +L +R G Sbjct: 7 PLYKQLKQELIQKIERGELKPGDVLPPERELAKIFNMSRMTVRQAISELVNEYVLIRRHG 66 Query: 69 KGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMI-PGNDILEQLELPPGSQT 127 GT+VA K P+ ++ SF+E +L G +P +K+ ++++ P ++ EL + Sbjct: 67 SGTYVAEHKIPQG-KKLKSFSEEMRLRGMLPGSKLCEKKIVLSPSANM--AAELKSEGKL 123 Query: 128 VYISRLRLLDNNPMVIENNYFSI-QYSFLLEENLNDHSLFQILKEKTGIQISKSKRTIEI 186 + RLRL D PM IE + I ++ L N + SL++IL+E+ I+++K+++ IE+ Sbjct: 124 FMLKRLRLADLEPMAIETSLLPINRFPSLENRNFENESLYEILEEEYNIKMTKAQQKIEV 183 Query: 187 CRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKL 234 T QE+ L ++ P+ V + ND I V + + G++Y++ Sbjct: 184 RMPTPQESELLDINYTIPVFHFKQVTFDQNDTIFEVAHSVYRGDRYEI 231 >BH0419 [K] COG2188 Transcriptional regulators Length = 240 Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 131/236 (55%) Query: 1 MLDEKIATPLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNE 60 M+++ P+Y Q++E++K +I G LKPG+ L E E A+ Y+VS +TVR+A N L N+ Sbjct: 1 MINKNSPLPIYYQIEEQIKQQIESGVLKPGDMLKSEREYAEYYDVSRMTVRQAINNLVNQ 60 Query: 61 GLLEKRQGKGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLE 120 G + K++G GT+V K + LN + SFTE + G PS+++L EL+ I ++L Sbjct: 61 GYIYKKKGSGTYVQEKKIEQALNGLTSFTEDMRKRGMEPSSRLLKFELIPATAKIAKELN 120 Query: 121 LPPGSQTVYISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKS 180 L + I R+R D P+ IE N L E + + SL+Q ++E+ ++I+ + Sbjct: 121 LKENTPVTEIKRIRYGDGVPIAIERNLLPANLVKGLNEEIINQSLYQYIEEELNLRIADA 180 Query: 181 KRTIEICRATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKLHV 236 + IE A+ EA L++ K SP+LL+ + + ++ + ++YK + Sbjct: 181 LQVIEASTASKTEADLLEIQKGSPILLIERKTFLADGTVLELVKSAYRADRYKFMI 236 >BS_yvoA [K] COG2188 Transcriptional regulators Length = 243 Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 124/226 (54%) Query: 9 PLYEQLKEKLKNEIAEGRLKPGEKLLPEVELAQKYEVSVITVRRATNELRNEGLLEKRQG 68 P+Y Q+ E+LK +I G L+P L E E A+++ +S +TVR+A + L NEGLL + +G Sbjct: 10 PIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKG 69 Query: 69 KGTFVAMAKYPKDLNQILSFTEASKLIGAVPSAKVLASELMIPGNDILEQLELPPGSQTV 128 +GTFV+ K + L + SFTE K G P ++++ +L+ ++ L S Sbjct: 70 RGTFVSKPKMEQALQGLTSFTEDMKSRGMTPGSRLIDYQLIDSTEELAAILGCGHPSSIH 129 Query: 129 YISRLRLLDNNPMVIENNYFSIQYSFLLEENLNDHSLFQILKEKTGIQISKSKRTIEICR 188 I+R+RL ++ PM IE+++ + + L E+ S++ ++ I IS++K+ +E Sbjct: 130 KITRVRLANDIPMAIESSHIPFELAGELNESHFQSSIYDHIERYNSIPISRAKQELEPSA 189 Query: 189 ATMQEASYLQVSKNSPLLLVHGVVYGNNDKIVYVGNQIINGEKYKL 234 AT +EA+ L + K +P+LL+ Y N + G++Y Sbjct: 190 ATTEEANILGIQKGAPVLLIKRTTYLQNGTAFEHAKSVYRGDRYTF 235 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.134 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,568,982 Number of extensions: 628067 Number of successful extensions: 2264 Number of sequences better than 1.0e-05: 144 Number of HSP's gapped: 2206 Number of HSP's successfully gapped: 144 Length of query: 236 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 133 Effective length of database: 26,499,029 Effective search space: 3524370857 Effective search space used: 3524370857 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 114 (48.5 bits)