BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0029.p (328 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 397 e-110 BH0351 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 381 e-105 BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 377 e-104 CAC3641 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 375 e-104 CAC3635 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 375 e-104 >BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust. Identities = 185/324 (57%), Positives = 249/324 (76%), Gaps = 3/324 (0%) Query: 1 MGNPSPYLLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKST 60 MG P LLEV+ L K + G SRK V+AVD +S ++ +GE+LG+VGESGCGKST Sbjct: 1 MGKP---LLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKST 57 Query: 61 LGRSILRLIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIG 120 G++ILRLIEP+SG + F G +I A + + R R+++QIIFQD A+LNPR T+ +II Sbjct: 58 TGKAILRLIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIR 117 Query: 121 APLDIYGLAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLI 180 PL ++ + + + R+ ELLE VGL+ D+ R+PH+FSGGQ+QRIGIARALAV PKL+ Sbjct: 118 EPLIVHQIGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLV 177 Query: 181 VCDEPVSALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEI 240 +CDEPVSALDVSV++Q+LNLM +LKE LTY+FI+HDLSVV H+ DRVAVMYLG++VE+ Sbjct: 178 ICDEPVSALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEM 237 Query: 241 TDRNELYGNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRM 300 +++L+ NP HPYT+ALLSA+P P+P+ ++E+I+L+GDVPSPSNPP GC+FHTRCP M Sbjct: 238 ATKDQLFENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCM 297 Query: 301 DKCSVEVPILLQTQGNHSVSCHLY 324 D C ++ P L + + H V+CHLY Sbjct: 298 DVCKIKRPSLHEKEKGHYVACHLY 321 >BH0351 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 332 Score = 381 bits (978), Expect = e-105, Method: Compositional matrix adjust. Identities = 173/318 (54%), Positives = 235/318 (73%), Gaps = 2/318 (0%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 LLE + L KH+ G RKK V++AVDG+ L I GE LG+VGESGCGKSTLG+ ++R Sbjct: 5 LLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMR 64 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 L+EPT G + F G D LA E R R ++QIIFQD ++LNPRMTV EIIG PL + Sbjct: 65 LLEPTRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKTHR 124 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 LA+G +R++EL++ VGL++ Y R+PHEFSGGQ+QRIGIARA+A++PKLI+CDEPVS Sbjct: 125 LAKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVS 184 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVS++AQ+LNLM L+++ LT+LFI+H L V H+ DR+AVMYLGK+VE+ ++ L+ Sbjct: 185 ALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALF 244 Query: 248 GNPLHPYTKALLSAIPNPNPEISRER--IVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSV 305 P+HPY++ L+ A+P P+P + ++ + LEGD+PSP +PP GC FH RCPY DKC+V Sbjct: 245 AQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTV 304 Query: 306 EVPILLQTQGNHSVSCHL 323 + P L + + H V+CH Sbjct: 305 QEPALTEKEPGHFVACHF 322 >BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/318 (57%), Positives = 232/318 (72%), Gaps = 3/318 (0%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 LL+V LK+++ K G+L R VKAVD +S I +GE + +VGESGCGKST GR+ILR Sbjct: 5 LLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILR 64 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 L EPT G I F+G+D+L+ K E R RK+LQIIFQD A++NPR T+ +++ ++I Sbjct: 65 LDEPTDGKIEFQGEDLLSLNKREMRKKRKDLQIIFQDPYASINPRQTIRQVLEEAMEIQK 124 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 + + + RI EL++ VGL +RFPHEFSGGQ+QRIGIARAL+V PKLIVCDE VS Sbjct: 125 VVPRDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVCDEAVS 184 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVS++AQV+NL+K L+ + LTYLFISHDL VV H+ DRV VMYLG+IVEI D+ L+ Sbjct: 185 ALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADKTSLF 244 Query: 248 GNPLHPYTKALLSAIPNPNPEISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSVEV 307 NP HPYTKALLSAIP P+PE +ERI+L+GDVPSP +PP GC FHTRCP+ DKC E Sbjct: 245 ENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCPFATDKCRTET 304 Query: 308 PILLQT---QGNHSVSCH 322 P L + H +CH Sbjct: 305 PELRTADYMKDGHLAACH 322 >CAC3641 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 326 Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/320 (57%), Positives = 244/320 (76%), Gaps = 2/320 (0%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 LLEV+ LKK + K G K VKAVD +S I KGE LGLVGESGCGK+T GR++L+ Sbjct: 7 LLEVKNLKKWFPVKKGFFGGKVSNVKAVDDVSFTINKGETLGLVGESGCGKTTTGRTVLK 66 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 L EPTSG I+++G+DI +E R+++Q+IFQD A+LN RMTVG+IIG +DI+ Sbjct: 67 LYEPTSGQIIYDGKDIAKLSYKEMLPYRRKMQMIFQDPYASLNSRMTVGDIIGESIDIHN 126 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 L++G ++ RI LL+ VGLN D++NR+PHEFSGGQ+QRIGIARALAVEP+ IVCDEP+S Sbjct: 127 LSKGNERKERIEYLLKKVGLNGDHINRYPHEFSGGQRQRIGIARALAVEPEFIVCDEPIS 186 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVS++AQV+N+++EL+E+LGLTYLFI+HDLS+V H+ ++ VMYLG ++E+ + +ELY Sbjct: 187 ALDVSIQAQVVNMLEELQEELGLTYLFIAHDLSMVKHISTKIGVMYLGNLIEVGESSELY 246 Query: 248 GNPLHPYTKALLSAIPNPNPE--ISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSV 305 NPLHPYTKALLSA+P P+P+ +R+RI+LEG++PSP +PP GC F RC Y +C Sbjct: 247 NNPLHPYTKALLSAVPVPDPDEAAARQRIILEGEIPSPIDPPKGCKFRGRCKYAKPECGE 306 Query: 306 EVPILLQTQGNHSVSCHLYN 325 P NHSV+C+LY Sbjct: 307 ATPAFKDMGNNHSVACYLYQ 326 >CAC3635 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 350 Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/319 (57%), Positives = 244/319 (76%), Gaps = 2/319 (0%) Query: 8 LLEVRELKKHYTSKSGLLSRKKPVVKAVDGISLNIRKGEILGLVGESGCGKSTLGRSILR 67 LLEV+ LKK + K G + VKAVDG+S I+KGE LGLVGESGCGK+T GR+IL+ Sbjct: 31 LLEVKNLKKWFPVKKGFFGKNVSNVKAVDGVSFQIKKGETLGLVGESGCGKTTTGRTILK 90 Query: 68 LIEPTSGNIVFEGQDILAYGKEEKRMMRKELQIIFQDSGAALNPRMTVGEIIGAPLDIYG 127 L EPTSG I++ G+DI +E R+++Q+IFQD A+LN RMTVG+IIG +DI+ Sbjct: 91 LYEPTSGQIIYNGKDIAKLSYKEMLPYRRKMQMIFQDPYASLNSRMTVGDIIGESIDIHK 150 Query: 128 LAQGEAKERRINELLELVGLNKDYVNRFPHEFSGGQKQRIGIARALAVEPKLIVCDEPVS 187 L G+ ++ RI LL+ VGLN D++NR+PHEFSGGQ+QRIGIARALAVEP+ IVCDEP+S Sbjct: 151 LWTGKERKERIEYLLKKVGLNGDHINRYPHEFSGGQRQRIGIARALAVEPEFIVCDEPIS 210 Query: 188 ALDVSVRAQVLNLMKELKEKLGLTYLFISHDLSVVHHLCDRVAVMYLGKIVEITDRNELY 247 ALDVS++AQV+N+++EL+E+LGLTYLFI+HDLS+V H+ ++ VMYLG ++E+ + +ELY Sbjct: 211 ALDVSIQAQVVNMLEELQEELGLTYLFIAHDLSMVKHISTKIGVMYLGNLIEVGESSELY 270 Query: 248 GNPLHPYTKALLSAIPNPNPE--ISRERIVLEGDVPSPSNPPPGCSFHTRCPYRMDKCSV 305 NPLHPYTKALLSA+P P+P+ +R+RI+LEG++PSP +PP GC F RC Y +C Sbjct: 271 NNPLHPYTKALLSAVPVPDPDEAAARQRIILEGEIPSPIDPPRGCKFRGRCRYAKPECKD 330 Query: 306 EVPILLQTQGNHSVSCHLY 324 P NHSV+C+LY Sbjct: 331 AAPEFKDIGENHSVACYLY 349 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 25,724,744 Number of extensions: 1116774 Number of successful extensions: 9439 Number of sequences better than 1.0e-05: 2169 Number of HSP's gapped: 6176 Number of HSP's successfully gapped: 2420 Length of query: 328 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 221 Effective length of database: 26,037,693 Effective search space: 5754330153 Effective search space used: 5754330153 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 116 (49.3 bits)