BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0027.p (473 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SSO2737 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 205 2e-52 BH3875 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 171 2e-42 SP0150 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 169 6e-42 DR2017 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 150 3e-36 DR2025 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 142 1e-33 >SSO2737 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 0/453 (0%), Positives = 0/453 (0%), Gaps = 24/453 (5%) Query: 17 FEEDLKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIE-TPGHPIVYGKLDE 75 + + + + + E+ G + + + Sbjct: 1 MGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANL 60 Query: 76 GAQYTLLIYSMYDVLPAEE-PDWISDPWAAEIHDFQDYGKCIIGRGAVNTKGPTAAFFNT 134 +++ D + + + + A Sbjct: 61 NILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVK-----ASTMGDREAELATLEF 115 Query: 135 IKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFFPSFGEENR-VA 193 +K + GK P+ + + L + + + + + + + Sbjct: 116 LKQWVP-AGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYL-DVSTLKELARRWKPEILD 173 Query: 194 SIFMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTMVGEDEKEIL 253 +++ Sbjct: 174 GFTKQGTHQAMDDIRESVAE------- 226 Query: 254 VEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKKMLTVPTLN 313 Sbjct: 227 --- 283 Query: 314 IDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGYSDIEITEYG 373 Sbjct: 284 - 342 Query: 374 KAXXXXXXXXXXXXXQTLKRMYELMGARPQIWPWNPGSAPYFLFGKILGLPYVTGGMGHG 433 Sbjct: 343 402 Query: 434 ---SRQHSSNEYCTVKGVLDFEKSMVYYLNLFP 463 Sbjct: 403 435 >BH3875 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 171 bits (434), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 0/482 (0%), Positives = 0/482 (0%), Gaps = 40/482 (8%) Query: 6 MKDVFDYLEQHFEEDLKSTQEFMRLKSISATGE---GIRETA-----QVVKAMIEEVGGA 57 M + E + + + + A + Sbjct: 1 MGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTD--- 57 Query: 58 SEIIETPGHPIVYGK-LDEGAQYTLLIYSMYDVLPAEEPD-WISDPWAAEIHDFQDYGKC 115 + + + +++ + + + + Sbjct: 58 -ANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAE----LA- 111 Query: 116 IIGRGAVNTKGPTAAFFNTIKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKF 175 + + + + + L +L++ K + Sbjct: 112 TLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI 171 Query: 176 AECDAMFF---PSFGEENRVASIFMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGN 232 + + Sbjct: 172 -LDGFTKQGTHQAMDDIR------- 223 Query: 233 PAWRLVKALSTMVGEDEKEILVEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDR 292 Sbjct: 224 --- 280 Query: 293 FKWDLEGLDLWKKMLTVPTLNIDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKML 352 Sbjct: 281 - 339 Query: 353 GKIRNHLDKHGYSDIEITEYG-KAXXXXXXXXXXXXXQTLKRMYELMGARPQIWPWNPGS 411 Sbjct: 340 399 Query: 412 APYF-LFGKILGLPYVTGGMGHGSRQ-HSSNEYCTVKGVLDFEKSMVYYLNLFPQVAEEM 469 Sbjct: 400 --- 456 Query: 470 KN 471 Sbjct: 457 458 >SP0150 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 169 bits (429), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 0/441 (0%), Positives = 0/441 (0%), Gaps = 23/441 (5%) Query: 11 DYLEQHFEEDLKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIETPGHPIVY 70 + E ++++ I+ V+ Sbjct: 16 HCEWVENSMSANE---NNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVH 72 Query: 71 G--KLDEGAQYTLLIYSMYDVLPAE-EPDWISDPWAAEIHDFQDYGKCIIGRGAVNTKGP 127 + + L + + D A + + Sbjct: 73 QSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATL-----EFLKQWVPAGKSPI 127 Query: 128 TAAFFNTIKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFFPSFG 187 + + + + +++ + D F + Sbjct: 128 CGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMD-D 186 Query: 188 EENRVASIFM--GVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTMV 245 VA + Sbjct: 187 IRESVAELAYYR------ 240 Query: 246 GEDEKEILVEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKK 305 Sbjct: 241 -- 298 Query: 306 MLTVPTLNIDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGYS 365 Sbjct: 299 358 Query: 366 DIEITEYGKAXXXXXXXXXXXXXQTLKRMYELMGARPQIWPWNPGSAPYFLFGKILGLPY 425 Sbjct: 359 418 Query: 426 VTGGMGHG-SRQHSSNEYCTV 445 Sbjct: 419 439 >DR2017 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 0/466 (0%), Positives = 0/466 (0%), Gaps = 30/466 (6%) Query: 11 DYLEQHFEEDLKSTQEFMRLKSISATGEGIRETAQVVKAMIEEVGGASEIIETPGHPIVY 70 H D S E++ + I ++ E + Sbjct: 3 KTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNI 62 Query: 71 GKLDEGAQYTLLIYSMYDVLPAEEPDWISDPWAAEIHDFQDYGKCIIGRGAVNTKGPTAA 130 ++ + A + + R A Sbjct: 63 LAEGPTI-AVHQSDEQLALMD-DWNVRT---HTASGLVERVKASTMGDREAELATLEFLK 117 Query: 131 FFNTIKAYKKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMF--FPSFGE 188 + + + FL + EL + ++L + K Sbjct: 118 QWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKE-LARRWKPEILDGFT 176 Query: 189 ENRVASIFMGVKGIVSFELKAKGGSWGGPKERGIHGAFAAWVGNPAWRLVKALSTMVGED 248 + M EL Sbjct: 177 KQG-THQAMDDIRESVAELAYYRE------- 228 Query: 249 EKEILVEGFYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKKMLT 308 Sbjct: 229 ---- 284 Query: 309 VPTLNIDGIKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHLDKHGYSDIE 368 Sbjct: 285 344 Query: 369 ITEYGKAXXXXXXXXXXXXXQTLKRMYELM-GARPQIWPWNPGSAPYFLF-----GKILG 422 Sbjct: 345 404 Query: 423 LPYVTGGMG-HGSRQHSSNEYCTVKGVLDFEKSMVYYLNLFPQVAE 467 Sbjct: 405 --- 447 >DR2025 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 0/343 (0%), Positives = 0/343 (0%), Gaps = 28/343 (8%) Query: 26 EFMRLKSISAT----GEGIRETAQVVKAMIEEVGGASEIIETPGHPIVYG-KLDEGAQYT 80 E + + E +IE ++ Q Sbjct: 21 ENSMSANENNLIWIDLEMTG-LDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLA 79 Query: 81 LLIYSMYDVLPAEEP--DWISDPWAAEIHDFQDYGKCIIGRGAVNTKGPTAAFFNTIKAY 138 L+ + + + + Sbjct: 80 LMDDWNVRTHT-ASGLVERVKASTMGDREAELATL-----EFLKQWVPAGKSPICGNSIG 133 Query: 139 KKIKGKLPVNLVFLIEGEEELSSKSLQQFLVDNKDKFAECDAMFFPSFGE-ENRVASIFM 197 + + L + L + + K E F + Sbjct: 134 QD-RRFLFKYMPELEAYFHYRYLDVSTLKELARRWKP-EILDGFTKQGTHQAMDDIRESV 191 Query: 198 GVKGIVSFELKAKGGSWGGPKERGIH-GAFAAWVGNPAWRLVKALSTMVGEDEKEILVEG 256 Sbjct: 192 ------- 244 Query: 257 FYDGILPLAKEGXXXXXXXXXXXXXXQWKKAYAIDRFKWDLEGLDLWKKMLTVPTLNIDG 316 Sbjct: 245 --- 301 Query: 317 IKGGYIGEGSKTLLPHETTVKMDIRLVPGMDPEKMLGKIRNHL 359 Sbjct: 302 344 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 35,979,235 Number of extensions: 1500621 Number of successful extensions: 2587 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 2551 Number of HSP's successfully gapped: 29 Length of query: 473 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 363 Effective length of database: 25,691,691 Effective search space: 9326083833 Effective search space used: 9326083833 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)