BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0024.p (293 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_appC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 219 5e-57 PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 196 4e-50 FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 190 3e-48 BH0349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 185 6e-47 CAC0178 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 180 3e-45 >BS_appC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 303 Score = 219 bits (557), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 119/287 (41%), Positives = 163/287 (56%), Gaps = 2/287 (0%) Query: 6 VKANSRKR--TVFLNFMKRYCHNKLAXXXXXXXXXXXXXXXFLPPFLQYAEDQIDPLAFS 63 +K N K+ T+ F +++ NKLA F P Y ++Q L Sbjct: 14 LKENISKKPETMTKIFWEKFSKNKLAILGAVILFIIIMSAVFAPLIAPYPQEQQSLLDKY 73 Query: 64 AAPGGSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFET 123 APG HL+GTD GRD+ SR+L G RVSL VG S + S+ +G LG LA +FRG + Sbjct: 74 KAPGLEHLMGTDKFGRDIFSRILYGARVSLLVGFASVVGSILIGTVLGALAGYFRGIVDA 133 Query: 124 VTMRLADIFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDY 183 V MR+ DI LS P+I L++ LV+IF P + GW ARL+ G LS++ ++Y Sbjct: 134 VIMRVVDIVLSIPDIFLLITLVTIFKPGVDKLILIFCLTGWTTTARLVRGEFLSLRSREY 193 Query: 184 IEGAAAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWG 243 + A IG K IIF +ILPNA+ PI++ T ++ I+ ES+LS+LG G+QPP ASWG Sbjct: 194 VLAAKTIGTKTHKIIFSHILPNALGPIIVSATLKVGSVILAESALSYLGFGIQPPIASWG 253 Query: 244 NMLYNAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPK 290 NML +AQ+ T++ + W NFVG+GLRDALDPK Sbjct: 254 NMLQDAQNFTVMIQAWWYPLFPGLFILMTVLCFNFVGDGLRDALDPK 300 >PAB0093 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 287 Score = 196 bits (498), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 109/275 (39%), Positives = 154/275 (56%), Gaps = 14/275 (5%) Query: 22 RYCHNKLAXXXXXXXXXXXXXXXFLP------PFLQYAEDQIDPLAFSAAPGGSHLLGTD 75 R+ NKL F P P Q+ ED++ P P + GTD Sbjct: 18 RFKKNKLGMIGLGIIIFWVLVAIFAPFIAPYSPVEQHLEDRLKP------PCEKYWFGTD 71 Query: 76 DVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFETVTMRLADIFLSF 135 + GRD+ SR++ G R++L VGI+ ALIS A+G+ LGL++ +F GK + + MR DI +F Sbjct: 72 EFGRDIFSRIVYGSRIALVVGIIVALISAAIGVTLGLISGYFGGKVDEIIMRAVDIVWAF 131 Query: 136 PNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDYIEGAAAIGEKQR 195 P +IL L +V+I GP ++GW +AR++ LS+KE+ +IE A AIGE Sbjct: 132 PALILALAIVAILGPGLINAMIAIALVGWASYARVVRAETLSVKEELFIEAARAIGESDL 191 Query: 196 TIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWGNMLYNAQSITIL 255 I+F YILPN ++ IL+ IT+ I AII SSLSFLG+G QPP+ WG ML +A+ + Sbjct: 192 RILFSYILPNVMSSILVLITYNIPSAIITASSLSFLGLGAQPPSPDWGLMLSSAR--VYV 249 Query: 256 SERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPK 290 + PW NFVG+GLRDA+ P+ Sbjct: 250 TRAPWYSIFPGLAIMTLVLGFNFVGDGLRDAIQPE 284 >FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 289 Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 145/227 (63%), Gaps = 2/227 (0%) Query: 66 PGGSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFETVT 125 P G H LGTD+ GRD+ +RL++G RVSL VGIL+ ISV +G LG ++ +F G + V Sbjct: 64 PNGKHWLGTDEFGRDIFARLIHGARVSLKVGILAISISVVVGGILGAISGYFGGVIDNVI 123 Query: 126 MRLADIFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVLSIKEKDYIE 185 MR+ DIFL+ P+I+L + +VS GPS V P FAR++ +VLSI+++++IE Sbjct: 124 MRVVDIFLAVPSILLAIAIVSALGPSMLNLMISISVSYVPNFARIVRASVLSIRDQEFIE 183 Query: 186 GAAAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQPPAASWGNM 245 A AIG II K+I+PN++AP+++Q T +AGAI+ + LSF+G+G+QPPA WG+M Sbjct: 184 AAKAIGASNSRIIMKHIIPNSLAPVIVQGTLGVAGAILSTAGLSFIGLGIQPPAPEWGSM 243 Query: 246 LYNAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPKTR 292 L + L W+ S+N +G+GLRDALDP+ + Sbjct: 244 LSGGRQ--YLRYAWWVTTFPGVAIMITILSLNLLGDGLRDALDPRLK 288 >BH0349 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 305 Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 94/234 (40%), Positives = 144/234 (61%), Gaps = 2/234 (0%) Query: 57 IDPLAFSAAPGGSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAF 116 + P A+ H LGTD +GRD+ SR++ G R+SL VG+ + +++ +G+ +G++A F Sbjct: 69 LKPPAWLDGGSSEHFLGTDHLGRDIWSRMVYGSRISLLVGVTAVVLAGLIGVTVGMVAGF 128 Query: 117 FRGKFETVTMRLADIFLSFPNIILILFLVSIFGPSXXXXXXXXGVLGWPFFARLMFGTVL 176 + G +T MRL D FLS PNI+L L ++S+FGP GV W +ARL+ G VL Sbjct: 129 YGGWLDTAFMRLVDSFLSIPNILLALVILSVFGPGVWTLIFVLGVTNWVNYARLVRGEVL 188 Query: 177 SIKEKDYIEGAAAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQ 236 SIKE+++++ A AIG K R ++ +++LPN ++P ++ T +A IILE+SLSFLG+G+Q Sbjct: 189 SIKEREFVKAARAIGVKNRMVMVRHLLPNVVSPFIVISTLSVATTIILEASLSFLGLGIQ 248 Query: 237 PPAASWGNMLYNAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPK 290 PP SWG +L + + S W+ I F+G+ LRD LDP+ Sbjct: 249 PPDISWGGILSDGRDYIATSW--WLATFPGLAITLTVLGIIFLGDWLRDVLDPR 300 >CAC0178 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 301 Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 159/296 (53%), Gaps = 9/296 (3%) Query: 6 VKANSRKRTVFLNFM--KRYCHNKLAXXXXXXXXXXXXXXXFLPPFLQYAEDQIDPLAFS 63 VKA K+ + M R +KLA P Y+ D +D + Sbjct: 5 VKAIDNKKIISPTKMAWHRLKKDKLALAGLFIVLFMIIFAVLGPVVSCYSTDTMDYSNPT 64 Query: 64 AAPGGSHLLGTDDVGRDVLSRLLNGGRVSLFVGILSALISVALGIPLGLLAAFFRGKFET 123 P HL+GTD++GRD+L+RL+ GR+SL VG+ + ++ + +G G +A F+ G + Sbjct: 65 IGPSLHHLMGTDELGRDILTRLMYAGRISLAVGVAAVVVEIIVGSAFGAIAGFYGGIIDG 124 Query: 124 VTMRLADIFLSFPNIILILFLVSIFGP-------SXXXXXXXXGVLGWPFFARLMFGTVL 176 + MR+ADIFL P +++ + ++F G+L WP R++ G +L Sbjct: 125 IIMRIADIFLCVPFFPILITIAALFSDLKIKSQFKVPFLMFIIGILSWPGLCRIVRGQIL 184 Query: 177 SIKEKDYIEGAAAIGEKQRTIIFKYILPNAIAPILIQITFRIAGAIILESSLSFLGMGVQ 236 +++E++++ A A+G K R IFK++LPN I I++ T I AI+ ESSLSFLG+GV Sbjct: 185 TLREQEFMLAANALGIKDRKKIFKHLLPNTIPSIIVSATLNIGSAILTESSLSFLGLGVV 244 Query: 237 PPAASWGNMLYNAQSITILSERPWMWXXXXXXXXXXXXSINFVGNGLRDALDPKTR 292 PP SWGNM+ + + L PW+W +IN +G+GLRDALDPK + Sbjct: 245 PPTPSWGNMVQSVSDLYKLEHYPWLWMPAGICILLTVMAINLLGDGLRDALDPKLK 300 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,975,413 Number of extensions: 634730 Number of successful extensions: 2716 Number of sequences better than 1.0e-05: 204 Number of HSP's gapped: 2585 Number of HSP's successfully gapped: 208 Length of query: 293 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 187 Effective length of database: 26,153,027 Effective search space: 4890616049 Effective search space used: 4890616049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)