BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0023.p (167 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC0177 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 185 3e-47 CAC3180 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 164 5e-41 CAC2375 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 164 7e-41 BMEI0435 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tra... 157 5e-39 STM3629 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 154 6e-38 >CAC0177 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 322 Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 83/170 (48%), Positives = 127/170 (74%), Gaps = 4/170 (2%) Query: 2 LLYLFSVKLQLLPIGGMYTVGTA----NSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSM 57 L+ F + ++ P+ GM T G+ F +L H+ +P LVL+F + +L+++ R+SM Sbjct: 152 LIKWFCIDFKIFPVSGMTTSGSNAAGIKKFGDILYHMFLPFLVLTFESVASLMRYMRTSM 211 Query: 58 LEVMREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWP 117 LEV+R+DY+RTA+AKGL+E+V+I +H LRNSLIPV T LGM +P L GA++TEQ+FSWP Sbjct: 212 LEVIRQDYIRTARAKGLKEKVVIYKHALRNSLIPVITILGMWLPGLFCGAIITEQIFSWP 271 Query: 118 GIGKLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 GIG++ +Q++S RDYP++MG T+L+A+ L+ NL+ D+ Y ++DPRIR + Sbjct: 272 GIGRVTLQAVSHRDYPLLMGFTMLIAVLTLLGNLVADVAYAVVDPRIRLE 321 >CAC3180 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 318 Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 121/171 (70%), Gaps = 4/171 (2%) Query: 1 VLLYLFSVKLQLLPIGGMYTVGTA----NSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSS 56 +++ F V L++LPIGGM G+ + L ++ H+I+P +L+F +G+L ++ RSS Sbjct: 148 LMIKFFGVDLKILPIGGMVETGSTTIGLSHILEVIRHMILPVGILTFLSIGSLTRYFRSS 207 Query: 57 MLEVMREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSW 116 ML+V+++D++RTA+A GL+ER +I +H L+N+++P T L E+P L GA++TEQ+F+W Sbjct: 208 MLDVLKQDFIRTARANGLKERKIIFKHALKNAILPAITLLSFELPGLFSGAIITEQIFNW 267 Query: 117 PGIGKLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 PGIG++ ++++S RDYPV+M T+L++ + N D++Y DPRIR + Sbjct: 268 PGIGRIQLEALSFRDYPVLMTFTMLLSFLTIFGNFCADILYAAADPRIRLE 318 >CAC2375 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 317 Score = 164 bits (414), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 73/170 (42%), Positives = 115/170 (67%), Gaps = 4/170 (2%) Query: 1 VLLYLFSVKLQLLPIGGMYTVGTA----NSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSS 56 +L+ F+ L + P+ GM G L +L H+++PC VL+ TLI++ R+S Sbjct: 147 ILMKWFAADLNIFPVEGMTATGENFHGIKRLLDILYHMVLPCAVLTIVNAATLIRYVRAS 206 Query: 57 MLEVMREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSW 116 MLEV+ +DY+ TAKAKGL E+V+I +H L+N++IP+ T G+ I L GA+VTE++F W Sbjct: 207 MLEVINKDYIITAKAKGLNEKVVIYKHALKNAMIPLVTIFGISIANLFTGAIVTEEIFGW 266 Query: 117 PGIGKLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRY 166 PGIGKL + ++ RDYP++MG+ ++V + + NL D++Y ++DPRI+Y Sbjct: 267 PGIGKLSLDAVLQRDYPLLMGINMIVVILTFVGNLAADVLYAVIDPRIKY 316 >BMEI0435 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 347 Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 79/171 (46%), Positives = 118/171 (69%), Gaps = 11/171 (6%) Query: 2 LLYLFSVKLQLLPIGGMYTV-----GTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSS 56 LLY F+ P+ G + G +FLS +HLI+P +VL+ + + + TRS+ Sbjct: 183 LLYYFT------PVSGFMLIDSLLSGQKGAFLSAASHLILPTIVLATIPLAVIARQTRSA 236 Query: 57 MLEVMREDYVRTAKAKGLQERVLIVRHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSW 116 MLEV+ EDYVRTA+AKGL R ++ H LRN++IPV T +G+++ +L+ GA++TE +FSW Sbjct: 237 MLEVLGEDYVRTARAKGLPIRRIVGLHALRNAMIPVITTIGLQVGVLMAGAILTETIFSW 296 Query: 117 PGIGKLMIQSISARDYPVIMGVTVLVALAVLIFNLITDLVYGLLDPRIRYD 167 PGIGK M+ SIS RDYPV+ +L+A +++ NL+ DL+YGL++PRIR+ Sbjct: 297 PGIGKWMLDSISRRDYPVVQSGLLLIAFIIMVVNLVVDLLYGLINPRIRHK 347 >STM3629 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 339 Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 68/145 (46%), Positives = 108/145 (74%) Query: 22 GTANSFLSLLAHLIMPCLVLSFHMMGTLIQFTRSSMLEVMREDYVRTAKAKGLQERVLIV 81 G +F+ LAH+I+P +VL + +++ TRSSMLEV+ EDY+RTA+AKGL +I+ Sbjct: 193 GEEGNFIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVII 252 Query: 82 RHVLRNSLIPVATYLGMEIPLLLGGAVVTEQVFSWPGIGKLMIQSISARDYPVIMGVTVL 141 H LRN+++PV T +G+++ LL GA++TE +FSWPG+G+ +I ++ RDYPV+ G +L Sbjct: 253 VHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLL 312 Query: 142 VALAVLIFNLITDLVYGLLDPRIRY 166 VA +++ NL+ DL+YG+++PRIR+ Sbjct: 313 VATMIILVNLLVDLLYGVVNPRIRH 337 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.145 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,659,421 Number of extensions: 416719 Number of successful extensions: 1910 Number of sequences better than 1.0e-05: 200 Number of HSP's gapped: 1839 Number of HSP's successfully gapped: 200 Length of query: 167 Length of database: 38,378,431 Length adjustment: 99 Effective length of query: 68 Effective length of database: 26,960,365 Effective search space: 1833304820 Effective search space used: 1833304820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 112 (47.8 bits)