BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0530.0018.p (307 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3498 [G] COG0524 Sugar kinases, ribokinase family 213 2e-55 STM3600 [G] COG0524 Sugar kinases, ribokinase family 202 5e-52 BS_yurL [G] COG0524 Sugar kinases, ribokinase family 156 3e-38 BS_yhfQ [P] COG4594 ABC-type Fe3+-citrate transport system, peri... 131 2e-30 Z4734m [G] COG0524 Sugar kinases, ribokinase family 123 4e-28 >CAC3498 [G] COG0524 Sugar kinases, ribokinase family Length = 295 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/293 (39%), Positives = 169/293 (57%), Gaps = 8/293 (2%) Query: 3 KVIGIGDNVGDIYLDSYEMFPGGQALNFSVYAKRLGAESAYIGVFGDDAVARHIAGTLDE 62 K++ IGDNV D YL +M+PGGQ +N VY K GAE+AYIG +G+D VA + TL E Sbjct: 5 KIVAIGDNVCDKYLSRGKMYPGGQCINTCVYGKMNGAETAYIGKYGNDEVAECVQNTLKE 64 Query: 63 VGVDRSHCRHVQGENGYALVELVDGDRVFLGSNRGGVLKDKPIILDSRDESYIRQFDLVH 122 +G+D SHCRH +GENG+ALV L + DRVFLGSN+GG+ K+ D D YI++FDL++ Sbjct: 65 IGIDDSHCRHYEGENGFALVTLKNADRVFLGSNKGGIAKEHSYNFDENDFEYIKKFDLIY 124 Query: 123 TSNNSYFNEQLSKVHKLGVAISYDFSKSWSNWRDVEQIAPHLDYGFLSCSSDMTDEEAGG 182 T+ NSY + L ++H GV I+YDFS W++ + ++ P++D LSC+ +T EE Sbjct: 125 TNLNSYIEDNLKELHATGVPIAYDFSMRWTD-EYLLKVCPYIDVAILSCAH-LTAEER-- 180 Query: 183 TCRKXXXXVHALGCRSVVATLGSRGAW-FYDGELRLFQASQYVDPVDTLGAGDSFAAAFL 241 K V G + V+ T+G G++ Y+G+ A + +DT+GAGDS+ + FL Sbjct: 181 --EKEMKKVQNYGVKIVLGTIGEDGSYVLYNGDFLYTSAIMAANIIDTMGAGDSYFSTFL 238 Query: 242 VDYLRQNKLDQGLMNTSTHDREEXXXXXXXXXXXXXXXXXXERGAFGYGKKYQ 294 L+ ++ + + T + E GAFGYG Q Sbjct: 239 CSLLQTSETGKLVEGTKESMKIRLESAMKSGAIFAANVCGME-GAFGYGVPIQ 290 >STM3600 [G] COG0524 Sugar kinases, ribokinase family Length = 281 Score = 202 bits (514), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 159/292 (54%), Gaps = 15/292 (5%) Query: 2 VKVIGIGDNVGDIYLDSYEMFPGGQALNFSVYAKRLGAESAYIGVFGDDAVARHIAGTLD 61 + V+GIGDNV D YL S M+PGG ALNF+VYAK SA++G FG+D A+H+ L Sbjct: 3 ISVLGIGDNVVDKYLHSGIMYPGGNALNFAVYAKLADIPSAFMGAFGNDDAAQHVQDVLH 62 Query: 62 EVGVDRSHCRHVQGENGYALVELVDGDRVFLGSNRGGVLKDKPIILDSRDESYIRQFDLV 121 ++ +D SH RH GENGYA + L GDR F+ SN+ GVL++ P L D YI QF LV Sbjct: 63 QLQIDISHSRHYTGENGYACIRLSHGDRQFVASNKNGVLREHPFSLSDDDLRYISQFTLV 122 Query: 122 HTSNNSYFNEQLSKVHKLGVAISYDFSKSWSNWRDVEQIAPHLDYGFLSCSSDMTDEEAG 181 H+S N + +L K+ + V +S+DFS ++ E++ P +DYGF+SCS DE Sbjct: 123 HSSINGHLESELEKIKQQTVLLSFDFSGRGTD-DYFEKVCPWVDYGFISCSGLSPDE--- 178 Query: 182 GTCRKXXXXVHALGCRSVVATLGSRGAWFYDGELRLFQASQYVDPVDTLGAGDSFAAAFL 241 + ++ GCR ++AT G +++ G L Y++PVDTLGAGD+F FL Sbjct: 179 --IKVKLNKLYRYGCRHIIATCGHEKVYYFSGADYLEWQPAYIEPVDTLGAGDAFLTGFL 236 Query: 242 VDYLRQNKLDQGLMNTSTHDREEXXXXXXXXXXXXXXXXXXERGAFGYGKKY 293 + L+ + +E GAFG+GK + Sbjct: 237 LSILQSGMAEP---------DKESVLRAMRQGGKSAAQVLSHYGAFGFGKPF 279 >BS_yurL [G] COG0524 Sugar kinases, ribokinase family Length = 284 Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 139/256 (54%), Gaps = 12/256 (4%) Query: 2 VKVIGIGDNVGDIYLDSYEMFPGGQALNFSVYAKRLGAESAYIGVFGDDAVARHIAGTLD 61 +K+I +GDNV D Y D +PGG ALN +V AKRLG ES+YIG+ G+D A H+ L Sbjct: 1 MKLIAVGDNVVDYYQDQETFYPGGNALNVAVLAKRLGHESSYIGIVGNDEAAAHLLNVLK 60 Query: 62 EVGVDRSHCRHVQGENGYALVELVD-GDRVFLGSNRGGVLKDKPIILDSRDESYIRQFDL 120 V+ + R GENG A+V L + GDR+F+ SN+GG+ + +D S+I DL Sbjct: 61 LEQVNADYIRQAHGENGMAIVTLDEQGDRIFVRSNKGGIQSRLRLAFQEKDVSFISGHDL 120 Query: 121 VHTSNNSYFNEQLSKVHKLGVAISYDFSKSWSNWRD--VEQIAPHLDYGFLSCSSDMTDE 178 +HTS S L ++ L V +S+DFS +N D + ++ P++ Y F S SD+++ Sbjct: 121 LHTSVYSRLENDLPQLCGL-VPVSFDFS---TNREDDYLRRVCPYVTYAFFS-GSDLSES 175 Query: 179 EAGGTCRKXXXXVHALGCRSVVATLGSRGAWFYDGELRLFQASQYVDPVDTLGAGDSFAA 238 E C + H G + V T G +GA G+ Q D +DTLGAGDSF A Sbjct: 176 E----CGELAKTAHGYGAKMVCMTRGGQGAILSAGDRVYHQPIVEADIIDTLGAGDSFIA 231 Query: 239 AFLVDYLRQNKLDQGL 254 FL + + + L Sbjct: 232 GFLTAFCVKQDITYAL 247 >BS_yhfQ [P] COG4594 ABC-type Fe3+-citrate transport system, periplasmic component Length = 261 Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 123/256 (48%), Gaps = 14/256 (5%) Query: 1 MVKVIGIGDNVGDIYLDSYEMFPGGQALNFSVYAKRLGAESAYIGVFGDDAVARHIAGTL 60 M + IGDN DIY + F GG A+N +VY R G + I GDD + L Sbjct: 1 MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDL 60 Query: 61 DEVGVDRSHCRHVQGENGYALVELVDGDRVFLGSNRGGVLKDKPIILDSRDESYIRQFDL 120 +GVD SH G VEL D DRVF G GV+ D L D +++ Q+D+ Sbjct: 61 ARMGVDISHVHTKHGVTAQTQVELHDNDRVF-GDYTEGVMAD--FALSEEDYAWLAQYDI 117 Query: 121 VHTSNNSYFNEQLSKVHKLGVAISYDFSKSWSN--WRDVEQIAPHLDYGFLSCSSDMTDE 178 VH + + + ++H G ++DFS W + W + + PHLD+ F S + DE Sbjct: 118 VHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLW---QTLVPHLDFAFASAPQE--DE 172 Query: 179 EAGGTCRKXXXXVHALGCRSVVATLGSRGAWFYDGELRLFQASQYVDPVDTLGAGDSFAA 238 T R + A G +V+ TLG G+ +DG QA + V +DT+GAGDSF A Sbjct: 173 ----TLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVIDTMGAGDSFIA 228 Query: 239 AFLVDYLRQNKLDQGL 254 FL + L Q + Sbjct: 229 GFLCGWSAGMTLPQAI 244 >Z4734m [G] COG0524 Sugar kinases, ribokinase family Length = 262 Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/257 (33%), Positives = 121/257 (47%), Gaps = 15/257 (5%) Query: 1 MVKVIG-IGDNVGDIYLDSYEMFPGGQALNFSVYAKRLGAESAYIGVFGDDAVARHIAGT 59 M+K + IGDN DIY + F GG A+N +VY R G + I GDD + Sbjct: 1 MMKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIKPGCITWVGDDDYGTKLKQD 60 Query: 60 LDEVGVDRSHCRHVQGENGYALVELVDGDRVFLGSNRGGVLKDKPIILDSRDESYIRQFD 119 L +GVD SH G VEL D DRVF G GV+ D L D + + Q+D Sbjct: 61 LASMGVDISHVHTKHGVTAQTQVELHDNDRVF-GDYTEGVMAD--FALSEEDYAXLAQYD 117 Query: 120 LVHTSNNSYFNEQLSKVHKLGVAISYDFSKSWSN--WRDVEQIAPHLDYGFLSCSSDMTD 177 +VH + + + ++H G ++D S W + W + + PHLD+ F S + D Sbjct: 118 IVHAAIWGHAEDAFPQLHAAGKLTAFDVSDKWDSPLW---QTLVPHLDFAFASAPQE--D 172 Query: 178 EEAGGTCRKXXXXVHALGCRSVVATLGSRGAWFYDGELRLFQASQYVDPVDTLGAGDSFA 237 E R + A G V+ TLG G+ +DG QA + V +DT+GAGDSF Sbjct: 173 E----ALRLKMKAIVARGAGVVIVTLGENGSIAWDGVQFWRQAPEQVTVIDTMGAGDSFI 228 Query: 238 AAFLVDYLRQNKLDQGL 254 A FL + L Q + Sbjct: 229 AGFLCGWSAGMTLPQAM 245 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,560,291 Number of extensions: 1019849 Number of successful extensions: 1918 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 1912 Number of HSP's successfully gapped: 23 Length of query: 307 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 201 Effective length of database: 26,153,027 Effective search space: 5256758427 Effective search space used: 5256758427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)