BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0530.0008.p
         (181 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH3675 [K] COG0789 Predicted transcriptional regulators                96   2e-20
ybbI [K] COG0789 Predicted transcriptional regulators                  54   2e-07
ZybbI [K] COG0789 Predicted transcriptional regulators                 54   2e-07
ECs0545 [K] COG0789 Predicted transcriptional regulators               54   2e-07
ZyhdM [K] COG0789 Predicted transcriptional regulators                 50   1e-06

>BH3675 [K] COG0789 Predicted transcriptional regulators
          Length = 131

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 77/110 (70%), Gaps = 3/110 (2%)

Query: 67  MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126
           M IGE A +T V  SAIRHWEKEGL+  +RN ENGYR++T   +++I+++ +LRKTV+F+
Sbjct: 1   MTIGEAAELTNVQTSAIRHWEKEGLLSPERNLENGYRLYTPVHIRQILLIRTLRKTVYFL 60

Query: 127 ESMKQLLEALEIHDLTTIERSFKVALQKLNEQLEKQMNGIAELMRYIQFC 176
           + MK++++A+E   +   ++  + AL  ++++  +Q NG+ ++   I+ C
Sbjct: 61  DKMKEVVDAVEHQSIEKAKKITEEALVSIHQRNRQQFNGVHQM---IELC 107


>ybbI [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 67  MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126
           M I +VA ITG+   AIR +E++GL+      ENGYR +T + L ++ +L   R+  F +
Sbjct: 1   MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60

Query: 127 ESMKQLL 133
           E   +L+
Sbjct: 61  EESGELV 67


>ZybbI [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 67  MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126
           M I +VA ITG+   AIR +E++GL+      ENGYR +T + L ++ +L   R+  F +
Sbjct: 1   MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60

Query: 127 ESMKQLL 133
           E   +L+
Sbjct: 61  EESGELV 67


>ECs0545 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 40/67 (59%)

Query: 67  MKIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFI 126
           M I +VA ITG+   AIR +E++GL+      ENGYR +T + L ++ +L   R+  F +
Sbjct: 1   MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNL 60

Query: 127 ESMKQLL 133
           E   +L+
Sbjct: 61  EESGELV 67


>ZyhdM [K] COG0789 Predicted transcriptional regulators
          Length = 141

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 43/66 (65%)

Query: 68  KIGEVAAITGVNPSAIRHWEKEGLIRAKRNPENGYRVFTSRELKKIIVLSSLRKTVFFIE 127
           +IGE+A +  V P  IR++EK+ ++  +   E G+R++T  +L+++  +   R+  F +E
Sbjct: 3   RIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESDLQRLKFIRHARQLGFSLE 62

Query: 128 SMKQLL 133
           S+++LL
Sbjct: 63  SIRELL 68


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.133    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,721,014
Number of extensions: 438988
Number of successful extensions: 1217
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1238
Number of HSP's successfully gapped: 17
Length of query: 181
Length of database: 38,378,431
Length adjustment: 100
Effective length of query: 81
Effective length of database: 26,845,031
Effective search space: 2174447511
Effective search space used: 2174447511
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)