BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0019.p
         (174 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM1568 [C] COG2864 Cytochrome b subunit of formate dehydrogenase     102   3e-22

>STM1568 [C] COG2864 Cytochrome b subunit of formate dehydrogenase
          Length = 218

 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 9/175 (5%), Positives = 37/175 (21%), Gaps = 10/175 (5%)

Query: 1   MTEELNVGRLVNTHGIRGEIKILSSTDFPEVRFAPGKKLLVVPADGSQK---FEVTVESS 57
            T+ ++             + +   + F        + L                   + 
Sbjct: 9   RTKFVDRACHWTVVICFFLVALSGISFFFPT----LQWLTQTFGTPQMGRILHPFFGIAI 64

Query: 58  REHKGMYIVRLKGYTNINQIEKYKGSLLKVPGDDLVELPENEYYFHQIVGCEVYTDEDDS 117
                   VR   +   ++ +      +            +   ++       ++     
Sbjct: 65  FIALMFMFVRFVHHNIPDKKDIPWLKNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMI 124

Query: 118 RPLGTIKEILQPGANDVWVVKPVKGQDILIPVINDVVLDVDIQAKKITVHLMEGL 172
                +   +           P         +I+     + + A  I +++   +
Sbjct: 125 --FVLLVTGVIIWRPYFAQYFP-MQVVRYSLLIHAAAGIILMHAILIHMYMAFWV 176


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 13,735,437
Number of extensions: 558204
Number of successful extensions: 1573
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1571
Number of HSP's successfully gapped: 1
Length of query: 174
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 75
Effective length of database: 26,960,365
Effective search space: 2022027375
Effective search space used: 2022027375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)