BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0018.p
         (64 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CPn0720 [R] COG1837 Predicted RNA-binding protein (contains KH d...    69   2e-12
CT659 [R] COG1837 Predicted RNA-binding protein (contains KH dom...    61   3e-10
STM1567 [R] COG1064 Zn-dependent alcohol dehydrogenases                48   3e-06

>CPn0720 [R] COG1837 Predicted RNA-binding protein (contains KH domain)
          Length = 78

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 48/63 (76%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VD PE+V ++ V+  H I+YELSV   D+GK+IGK+GR  KA+RT++ S A +++ RV++
Sbjct: 13 VDRPEEVRIKEVQGTHTIIYELSVAKPDIGKIIGKEGRTIKAIRTLLVSVASRNNVRVSL 72

Query: 61 DIL 63
          +I+
Sbjct: 73 EIM 75


>CT659 [R] COG1837 Predicted RNA-binding protein (contains KH domain)
          Length = 78

 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 47/63 (74%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
          VD PE+V ++ V+  + I+YEL+V   D+GK+IGK+GR  KA+RT++ S A + + +V++
Sbjct: 13 VDKPEEVHLKEVQGTNTIIYELTVAKGDIGKIIGKEGRTIKAIRTLLVSVASRDNVKVSL 72

Query: 61 DIL 63
          +I+
Sbjct: 73 EIM 75


>STM1567 [R] COG1064 Zn-dependent alcohol dehydrogenases
          Length = 336

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 1/63 (1%)

Query: 1  VDHPEDVAVRTVEKDHLIVYELSVHPDDVGKVIGKQGRIAKALRTVVTSAAVKSDKRVTV 60
              + +      +  L +    V   D+    G  G     +        V ++    V
Sbjct: 13 DVTEKTLRPLRHGEALLKMECCGVCHTDLHVKNGDFGDKTGVIL-GHEGIGVVAEVGPGV 71

Query: 61 DIL 63
            L
Sbjct: 72 TSL 74


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,472,813
Number of extensions: 138428
Number of successful extensions: 384
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 3
Length of query: 64
Length of database: 38,378,431
Length adjustment: 36
Effective length of query: 28
Effective length of database: 34,226,407
Effective search space: 958339396
Effective search space used: 958339396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)