BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0017.p
         (70 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ML0393 [R] COG0637 Predicted phosphatase/phosphohexomutase             97   6e-21
STM1566 [C] COG0281 Malic enzyme                                       80   1e-15

>ML0393 [R] COG0637 Predicted phosphatase/phosphohexomutase
          Length = 346

 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 5/69 (7%), Positives = 10/69 (14%)

Query: 2  VSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVMK 61
              ++       +             V        +    G   +     L       K
Sbjct: 22 TFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREK 81

Query: 62 KFHELKQQK 70
               K   
Sbjct: 82 LIIASKVSG 90


>STM1566 [C] COG0281 Malic enzyme
          Length = 565

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 4/70 (5%), Positives = 16/70 (22%), Gaps = 1/70 (1%)

Query: 1  VVSDSRSPRDGRFIEEIGYYNPIEVPAVVKIDEEKALKWLQTGAQASDTVRNLLSKAGVM 60
          ++      +   F  E      +    + ++ E    +  +   Q       +     + 
Sbjct: 20 LLEFPLLNKGSAFSVEERRNFNLS-GLLPEVVESIEEQAERAWLQYQGFKTEIDKHIYLR 78

Query: 61 KKFHELKQQK 70
                +   
Sbjct: 79 NIQDTNETLF 88


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.314    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,095,343
Number of extensions: 185030
Number of successful extensions: 294
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 2
Length of query: 70
Length of database: 38,378,431
Length adjustment: 42
Effective length of query: 28
Effective length of database: 33,534,403
Effective search space: 938963284
Effective search space used: 938963284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 109 (46.6 bits)