BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0529.0010.p
         (120 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC0693 [KT] COG3279 Response regulator of the LytR/AlgR family         82   2e-16
CAC1670 [KT] COG3279 Response regulator of the LytR/AlgR family        76   1e-14
yehT [KT] COG3279 Response regulator of the LytR/AlgR family           68   4e-12
ZyehT [KT] COG3279 Response regulator of the LytR/AlgR family          68   4e-12

>VC0693 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 237

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 77/117 (65%), Gaps = 3/117 (2%)

Query: 1   MIQAFLLDMNRKDLYKLALMLQRSGQVNVIGMSAQPQEAVDKILQLQPEVLFMDLQGPGL 60
           M+ A L+D  R    +LA +L  SGQ+ VIG ++   E + KI QL+P+V+F+D+Q P +
Sbjct: 1   MLSALLIDDERFAREELAELLAESGQIEVIGQASNAIEGLKKINQLKPDVVFLDIQMPQI 60

Query: 61  QGV-LVAELVKQKIPHIQIVVVTESKQHALWAFDHAVADYVLKPLEEVRLSQSLERL 116
            G+ L++ L  + +P  ++V VT   Q+AL AF+    DY+LKP++  RL+++++RL
Sbjct: 61  SGIELLSMLDPETMP--EVVFVTAYDQYALQAFEDNAFDYLLKPVDTERLAKTVQRL 115


>CAC1670 [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 253

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 63/108 (58%), Gaps = 3/108 (2%)

Query: 10  NRKDLYKLALMLQRSGQVNVIGMSAQPQEAVDKILQLQPEVLFMDLQGPGLQGVLVAELV 69
           N K+LY    +L+R   + ++GM     E +D + +L+P+ +F+D+  P   G+ +AE +
Sbjct: 14  NEKELY---FILRRYDDIEIVGMVQNTDEGIDLVKKLRPQAVFLDINVPNFNGIKLAEEI 70

Query: 70  KQKIPHIQIVVVTESKQHALWAFDHAVADYVLKPLEEVRLSQSLERLR 117
           K     I ++ VT   ++A+ AF+    DY+LKP    R+ +++ERL+
Sbjct: 71  KDVDSTIAVIFVTAYDKYAVAAFEIKALDYILKPFSIARIEKAVERLK 118


>yehT [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 244

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 1   MIQAFLLDMNRKDLYKLALMLQRSGQVNVIGMSAQPQEAVDKILQLQPEVLFMDLQGPGL 60
           MI+  ++D        L + LQ    + ++G  +   E +  + +L+P+VLF+D+Q P +
Sbjct: 6   MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRI 65

Query: 61  QGV-LVAELVKQKIPHIQIVVVTESKQHALWAFDHAVADYVLKPLEEVRLSQSLERLR 117
            G+ +V  L  +  P+I  V +T   ++A+ AF+    DY+LKP++E RL ++L RLR
Sbjct: 66  SGLEMVGMLDPEHRPYI--VFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLR 121


>ZyehT [KT] COG3279 Response regulator of the LytR/AlgR family
          Length = 244

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 1   MIQAFLLDMNRKDLYKLALMLQRSGQVNVIGMSAQPQEAVDKILQLQPEVLFMDLQGPGL 60
           MI+  ++D        L + LQ    + ++G  +   E +  + +L+P+VLF+D+Q P +
Sbjct: 6   MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRI 65

Query: 61  QGV-LVAELVKQKIPHIQIVVVTESKQHALWAFDHAVADYVLKPLEEVRLSQSLERLR 117
            G+ +V  L  +  P+I  V +T   ++A+ AF+    DY+LKP++E RL ++L RLR
Sbjct: 66  SGLEMVGMLDPEHRPYI--VFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLR 121



 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 1   MIQAFLLDMNRKDLYKLALMLQRSGQVNVIGMSAQPQEAVDKILQLQPEVLFMDLQGPGL 60
           MI+  ++D        L + LQ    + ++G  +   E +  + +L+P+VLF+D+Q P +
Sbjct: 6   MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVHKLRPDVLFLDIQMPRI 65

Query: 61  QGV-LVAELVKQKIPHIQIVVVTESKQHALWAFDHAVADYVLKPLEEVRLSQSLERLR 117
            G+ +V  L  +  P+I  V +T   ++A+ AF+    DY+LKP++E RL ++L RLR
Sbjct: 66  SGLEMVGMLDPEHRPYI--VFLTAFDEYAIKAFEEHAFDYLLKPIDEARLEKTLARLR 121


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,854,068
Number of extensions: 257063
Number of successful extensions: 1085
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 1120
Number of HSP's successfully gapped: 34
Length of query: 120
Length of database: 38,378,431
Length adjustment: 86
Effective length of query: 34
Effective length of database: 28,459,707
Effective search space: 967630038
Effective search space used: 967630038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)