BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0526.0011.p (241 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3616 [N] COG1344 Flagellin and related hook-associated proteins 221 8e-58 CAC2203 [N] COG1344 Flagellin and related hook-associated proteins 216 3e-56 TP0870 [N] COG1344 Flagellin and related hook-associated proteins 198 5e-51 BS_hag [N] COG1344 Flagellin and related hook-associated proteins 178 6e-45 CAC1555 [N] COG1344 Flagellin and related hook-associated proteins 162 4e-40 >BH3616 [N] COG1344 Flagellin and related hook-associated proteins Length = 272 Score = 221 bits (563), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 127/259 (49%), Positives = 162/259 (62%), Gaps = 20/259 (7%) Query: 1 MGLNTTATSKNMEKLSSGLRINRAADDAAGLSISESMRGQIRGLEQAQRNAQDGISFVQT 60 MG+N K MEKLSSGLRINRA DDAAGL+ISE MR QIRGL+QA RN+QDGIS +QT Sbjct: 16 MGINLNQGQKAMEKLSSGLRINRAGDDAAGLAISEKMRAQIRGLDQASRNSQDGISLIQT 75 Query: 61 AEGAMNEVSSMLTRMKELNVQKASGTYSTNDKANIDKELDQLGDQIDEIMTKTTFN---- 116 AEGA++EV S+L RM+EL VQ ++ T D+A ++ E QL ++I+ I T FN Sbjct: 76 AEGALDEVHSILQRMRELAVQSSNETNVEQDQAALNDEFQQLVEEIERIKDTTQFNTQKL 135 Query: 117 ------GISITAGAN--------ITVNDKXXXXXXXXXXXXXDFRNLSSATSLANVEVAI 162 + + GAN +T D D N SA + ++ + Sbjct: 136 LDDTVDTVQLQVGANSGELIELDLTKVDLSAIHTALAAEDITDHTNAQSA--IDAIDEQL 193 Query: 163 KSVSSERAKLGAVQNRLEYTSNNIGTTVENLSAAESRIRDTDMAKEMVALSKNNILLQAS 222 K+VS R+ LGA+QNRLE+T N+ ENL AAESRIRD DMAKEM+ ++ NIL QAS Sbjct: 194 KAVSEGRSYLGAMQNRLEHTIKNLDNASENLQAAESRIRDVDMAKEMMEFTRTNILNQAS 253 Query: 223 QSMLAQANSAPQGILSVLR 241 Q+MLAQAN PQ +L +LR Sbjct: 254 QAMLAQANQQPQAVLQLLR 272 >CAC2203 [N] COG1344 Flagellin and related hook-associated proteins Length = 275 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 119/260 (45%), Positives = 166/260 (63%), Gaps = 19/260 (7%) Query: 1 MGLNTTATSKNMEKLSSGLRINRAADDAAGLSISESMRGQIRGLEQAQRNAQDGISFVQT 60 M +N + ++EKLSSG RIN+A DDAAGL+ISE MR QI GL Q+ RNAQDGIS VQT Sbjct: 16 MNINNGEAANSIEKLSSGYRINKAGDDAAGLAISEKMRAQINGLNQSTRNAQDGISLVQT 75 Query: 61 AEGAMNEVSSMLTRMKELNVQKASGTYSTNDKANIDKELDQLGDQIDEIMTKTTFNG--- 117 AEG +NE ++L RM+EL VQ A+GT ++ D+AN++ E QL ++ I ++ FN Sbjct: 76 AEGNLNESQAILQRMRELAVQSATGTNTSTDRANLELEFKQLQSEVTRIAVQSEFNTKKL 135 Query: 118 ----------ISITAGAN------ITVNDKXXXXXXXXXXXXXDFRNLSSATSLANVEVA 161 ++ GAN +++N+ + ++ +V+ A Sbjct: 136 LDGSLTGTAQMTFQIGANSGQTISLSINNMSATSLGVNTTSASISTQTGAQAAITSVQKA 195 Query: 162 IKSVSSERAKLGAVQNRLEYTSNNIGTTVENLSAAESRIRDTDMAKEMVALSKNNILLQA 221 I +VSSERAKLG+VQNRLE+T NN+ T ENL +AESRIRD DMA EM+ +K+N+L+QA Sbjct: 196 IDTVSSERAKLGSVQNRLEHTINNLNTDSENLQSAESRIRDVDMASEMMNYTKSNVLVQA 255 Query: 222 SQSMLAQANSAPQGILSVLR 241 +Q+ML+QAN P +L +LR Sbjct: 256 AQAMLSQANQTPNNVLQLLR 275 >TP0870 [N] COG1344 Flagellin and related hook-associated proteins Length = 285 Score = 198 bits (504), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 111/269 (41%), Positives = 160/269 (59%), Gaps = 29/269 (10%) Query: 2 GLNTTATSKNMEKLSSGLRINRAADDAAGLSISESMRGQIRGLEQAQRNAQDGISFVQTA 61 G+N A +KN+EKLSSG RINRA DDA+GL++SE MR QIRGL QA +N Q+GISF+Q Sbjct: 17 GINGLAIAKNIEKLSSGYRINRAGDDASGLAVSEKMRSQIRGLNQAGQNIQNGISFIQAT 76 Query: 62 EGAMNEVSSMLTRMKELNVQKASGTYSTNDKANIDKELDQLGDQIDEIMTKTTFNGIS-- 119 EG + E + ++ R++EL +Q A+G YS D+ I E+ QL D++D I ++ FNG++ Sbjct: 77 EGYLAETTEIVQRLRELAIQAANGIYSAEDRMQIQVEVSQLVDEVDRIASQAQFNGMNLL 136 Query: 120 --------------ITAGANITVNDKXXXXXXXXXXX-------XXDFRNLSSAT----- 153 + GAN+ N+K R++S AT Sbjct: 137 TGRFSRESALGPMQLHVGANMDQNEKIFINTMTASALGFFSDEGTDGSRSISIATVDGAN 196 Query: 154 -SLANVEVAIKSVSSERAKLGAVQNRLEYTSNNIGTTVENLSAAESRIRDTDMAKEMVAL 212 + ++ A+K ++ +RA LGA QNR E I ENL AAESRIRD D+A++MV Sbjct: 197 KVIGTLDSALKEINKQRADLGAYQNRFETAYQGIAIAAENLQAAESRIRDADLAQQMVDY 256 Query: 213 SKNNILLQASQSMLAQANSAPQGILSVLR 241 +KN IL Q++ +MLAQAN+ PQ +L +++ Sbjct: 257 TKNQILEQSTMAMLAQANTQPQAVLRLMQ 285 >BS_hag [N] COG1344 Flagellin and related hook-associated proteins Length = 304 Score = 178 bits (452), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 123/288 (42%), Positives = 158/288 (54%), Gaps = 52/288 (18%) Query: 4 NTTATSKNMEKLSSGLRINRAADDAAGLSISESMRGQIRGLEQAQRNAQDGISFVQTAEG 63 N +A+ KNMEKLSSGLRINRA DDAAGL+ISE MRGQIRGLE A +N+QDGIS +QTAEG Sbjct: 19 NNSASQKNMEKLSSGLRINRAGDDAAGLAISEKMRGQIRGLEMASKNSQDGISLIQTAEG 78 Query: 64 AMNEVSSMLTRMKELNVQKASGTYSTNDKA----NIDKELDQLGDQIDEIMTKTTFNG-- 117 A+ E ++L R++EL VQ +G T DKA +I E+ L D+ID I +T FNG Sbjct: 79 ALTETHAILQRVRELVVQ--AGNTGTQDKATDLQSIQDEISALTDEIDGISNRTEFNGKK 136 Query: 118 ------------------ISITAGAN----ITVN----------DKXXXXXXXXXXXXXD 145 + GAN I+VN K D Sbjct: 137 LLDGTYKVDTATPANQKNLVFQIGANATQQISVNIEDMGADALGIKEADGSIAALHSVND 196 Query: 146 -----FRNLSSATSLANVEVAIKSVSSERAKLGAVQNRLEYTSNNIGTTVENLS------ 194 F + ++ T+ + +K V ++ + + +L N + T+ NLS Sbjct: 197 LDVTKFADNAADTADIGFDAQLKVVDEAINQVSSQRAKLGAVQNRLEHTINNLSASGENL 256 Query: 195 -AAESRIRDTDMAKEMVALSKNNILLQASQSMLAQANSAPQGILSVLR 241 AAESRIRD DMAKEM +KNNIL QASQ+MLAQAN PQ +L +LR Sbjct: 257 TAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLLR 304 >CAC1555 [N] COG1344 Flagellin and related hook-associated proteins Length = 278 Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 145/248 (58%), Gaps = 20/248 (8%) Query: 14 KLSSGLRINRAADDAAGLSISESMRGQIRGLEQAQRNAQDGISFVQTAEGAMNEVSSMLT 73 KLSSGLRIN A DD AGL ISE M+ QIRGL ++RN +DG S +QTAEG +NE ++L Sbjct: 29 KLSSGLRINSAKDDPAGLGISERMKAQIRGLNASKRNLEDGFSMLQTAEGGLNEAENILQ 88 Query: 74 RMKELNVQKASGTYSTNDKANIDKELDQLGDQIDEIMTKTTFNGIS-ITAGANITVNDKX 132 RM EL VQ A+GT + D+ +I EL QL D++ I FNGI ++A +++T+ Sbjct: 89 RMNELAVQAANGTNCSLDRNSIKDELKQLEDEVKHISVSINFNGIDLLSASSHVTIQGGP 148 Query: 133 XXXXXXXXXXXXDFRNL-------------------SSATSLANVEVAIKSVSSERAKLG 173 + N+ ++ +S++ ++ AI SVS RA++G Sbjct: 149 NSSPCDFLNIDMSYFNIGRSLADIINGTKINVDTPQNAKSSISVIQQAINSVSRSRAEIG 208 Query: 174 AVQNRLEYTSNNIGTTVENLSAAESRIRDTDMAKEMVALSKNNILLQASQSMLAQANSAP 233 + +NR+++ NN+ NL+++ SRI D DMA+E + K +IL +AS ++AQA P Sbjct: 209 SYENRIDFRINNLENEECNLTSSYSRITDVDMAEETMEYFKYSILSKASDILMAQALQEP 268 Query: 234 QGILSVLR 241 + +L +L+ Sbjct: 269 KQVLKLLQ 276 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.307 0.121 0.302 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 12,101,464 Number of extensions: 417520 Number of successful extensions: 1577 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 1548 Number of HSP's successfully gapped: 87 Length of query: 241 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 138 Effective length of database: 26,499,029 Effective search space: 3656866002 Effective search space used: 3656866002 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 114 (48.5 bits)