BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0526.0009.p
         (152 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HP1154 [S] COG1699 Uncharacterized protein conserved in bacteria       59   3e-09
jhp1081 [S] COG1699 Uncharacterized protein conserved in bacteria      58   6e-09
jhp1291 [S] COG1699 Uncharacterized protein conserved in bacteria      51   8e-07
HP1377 [S] COG1699 Uncharacterized protein conserved in bacteria       49   4e-06

>HP1154 [S] COG1699 Uncharacterized protein conserved in bacteria
          Length = 135

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 3/114 (2%)

Query: 22  YFFSKGLPGFEQLKEFSLKEHNDIFS-LLSAADQP-EVTFITVNPFDFVPDYEFILPEDT 79
           YF    + GFE + E  L++ + +FS L+S  + P  +  + VNP+  + +Y F++P+  
Sbjct: 3   YFLKAPILGFEHINEVRLEKIDSLFSRLISQTNSPMALDMVLVNPYC-LREYSFVIPKYI 61

Query: 80  IHELGVKDEKQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTY 133
              L +    +V V C+V    +     VN LAPL+FN+ +  G Q+ L    Y
Sbjct: 62  ELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDY 115


>jhp1081 [S] COG1699 Uncharacterized protein conserved in bacteria
          Length = 135

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 22  YFFSKGLPGFEQLKEFSLKEHNDIFS-LLSAADQP-EVTFITVNPFDFVPDYEFILPEDT 79
           YF    + GFE + E  L++ + +FS L+   + P  +  + VNP+  + +Y F++P+  
Sbjct: 3   YFLKAPILGFEHINEVRLEKIDSLFSRLMGQTNSPMALDMVLVNPYC-LREYSFVIPKYI 61

Query: 80  IHELGVKDEKQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTY 133
              L +    +V V C+V    +     VN LAPL+FN+ +  G Q+ L    Y
Sbjct: 62  ELLLELDSHSKVEVYCVVVLQKNLEDSMVNFLAPLVFNSKNGFGAQVALSMMDY 115


>jhp1291 [S] COG1699 Uncharacterized protein conserved in bacteria
          Length = 129

 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 2/109 (1%)

Query: 30  GFEQLKEFSLKEHNDIFSLL-SAADQPEVTFITVNPFDFVPDYEFILPEDTIHELGVKDE 88
           GFE + +  L++ ++IF  L SA D   V+F  VNPF  +  YEF +P      L ++  
Sbjct: 11  GFETIHKMHLQKIDEIFLRLNSAEDNSVVSFTLVNPFA-LRKYEFEVPTPLKILLELEGA 69

Query: 89  KQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKH 137
           K V V  I+   +     +VN LAPLIFN   +   Q+VL +  Y   H
Sbjct: 70  KSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSKKYPHYH 118


>HP1377 [S] COG1699 Uncharacterized protein conserved in bacteria
          Length = 146

 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 2/109 (1%)

Query: 30  GFEQLKEFSLKEHNDIFSLLSAADQPEV-TFITVNPFDFVPDYEFILPEDTIHELGVKDE 88
           GFE + +  L++ ++IF  L++ ++  V +F  VNPF  +  YEF +P      L ++  
Sbjct: 28  GFETIHKMRLQKIDEIFLRLNSTEENSVVSFTLVNPFA-LRKYEFEVPTPLKILLELEGA 86

Query: 89  KQVSVRCIVTWHSDRSKVSVNLLAPLIFNTVDRKGKQIVLQNTTYTTKH 137
           K V V  I+   +     +VN LAPLIFN   +   Q+VL +  Y   H
Sbjct: 87  KSVLVANIMVVQTPIELSTVNYLAPLIFNLDKQLMGQVVLDSNKYPHYH 135


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,365,054
Number of extensions: 403305
Number of successful extensions: 498
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 4
Length of query: 152
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 55
Effective length of database: 27,191,033
Effective search space: 1495506815
Effective search space used: 1495506815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)