BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0047.p (222 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll5936 [R] COG0603 Predicted PP-loop superfamily ATPase 182 5e-46 aq_831 [R] COG0603 Predicted PP-loop superfamily ATPase 107 2e-23 SSO0016_2 [R] COG0603 Predicted PP-loop superfamily ATPase 64 1e-10 mll5798 [R] COG0603 Predicted PP-loop superfamily ATPase 60 4e-09 >mll5936 [R] COG0603 Predicted PP-loop superfamily ATPase Length = 245 Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 103/228 (45%), Positives = 134/228 (58%), Gaps = 21/228 (9%) Query: 7 ALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVK------- 59 ALV+FSGGQDSTTCL WAL+N+E V+ + F+Y QRH Sbjct: 8 ALVLFSGGQDSTTCLAWALENFERVETIGFDYGQRHRIELDVRPYLLERIRTDFPAWRGR 67 Query: 60 ---QHILDLGLLHQLAPNALTRDDIEIAAGEGEELPSTFVDGRNLLFLSFAAILAKQLEF 116 H++D+ +L Q++ ALTR +E+A LP+TFV GRNLLFL FAA LA +L Sbjct: 68 LGGDHMIDMAVLGQISDTALTRG-VEVAL-NANGLPNTFVPGRNLLFLGFAAALAYRLSA 125 Query: 117 TNIVTGVCQTDFSGYPDCRDVFVKSLNVTLNLSMDYEFVIHTPLMWLDKKETWKLADELG 176 ++V GV +TD YPDCRD VK++ + LNL M+ F+IHTPLM DK +TW LAD LG Sbjct: 126 KHLVIGVAETDRFSYPDCRDDAVKAIQLALNLGMEKRFIIHTPLMHRDKAQTWALADWLG 185 Query: 177 ---CFEYIREHTLTCYNG------IIGSGCGTCPACLLRQRGLDQYEA 215 + I E + TCY+G G GCGTC C LR G +Q+ + Sbjct: 186 GEALVKLICEGSHTCYSGDREHRHSWGFGCGTCIECNLRAAGWEQFRS 233 >aq_831 [R] COG0603 Predicted PP-loop superfamily ATPase Length = 218 Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 103/219 (47%), Gaps = 14/219 (6%) Query: 1 MTMNNKALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQ 60 M ++ +V+ SGG DS T L A + +++V A++F+Y QRH V+ Sbjct: 1 MKKHDGIIVLLSGGMDSATLLWLAKREFKKVYAISFDYGQRHKVELKYAKELAKLAEVED 60 Query: 61 H-ILDLGLLHQLAPNALTRDDIEIAAGE--GEELPSTFVDGRNLLFLSFAAILAKQLEFT 117 H I+ + L +AL + +E+ GE E P T V RNL+FLS A+ A LE Sbjct: 61 HFIVQVPFYTSLKGSALIDESVEVPKGEYPENEPPVTTVPMRNLIFLSIASAFADNLEVN 120 Query: 118 NIVTGVCQTDFSGYPDCRDVFVKSLNVTLNLSMDY------EFVIHTPLMWLDKKETWKL 171 I GV D + YPDCR F+ + +N + ++ P + + K++ L Sbjct: 121 YIGIGVHALD-TPYPDCRPEFITAAEAAINAGSTFVAKKKERMHVYAPFLGMSKRDIALL 179 Query: 172 ADELGCFEYIREHTLTCYNGIIGSGCGTCPACLLRQRGL 210 ELG E T +CY G CG CP C+ R+ L Sbjct: 180 GKELGV---PFEKTYSCYMG-TEPPCGECPTCIQREEAL 214 >SSO0016_2 [R] COG0603 Predicted PP-loop superfamily ATPase Length = 245 Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 11/209 (5%) Query: 6 KALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXF-NVKQHILD 64 + LVV SGG DST L+ EV + FNY+ + + + ++ Sbjct: 24 RVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEEKEREAVRKIAEYLQIPLLEIN 83 Query: 65 LGLLHQLAPNALTRDDIEIA----AGEGEELPSTFVDGRNLLFLSFAAILAKQLEFTNIV 120 L + L + EI EG E +V RNL+F S + +A+ + I Sbjct: 84 TDLFKIIGHATLIKGGGEIVKDRKGEEGAEFAHEWVPARNLIFFSVSLAIAEAYGYDAIA 143 Query: 121 TGVCQTDFSGYPDCRDVFVKSLNVTLNLSM--DYEFVIHTPLMWLDKKETWKLADELGCF 178 +G+ + YPD F++ LN + + I P+ L K E KL E+G Sbjct: 144 SGINLEEAGAYPDNEMEFIRMLNKLSPYATGPNKRIEILMPVGNLVKHEIVKLGYEIGAP 203 Query: 179 EYIREHTLTCYNGIIGSGCGTCPACLLRQ 207 ++ T +CY G CG C C +R+ Sbjct: 204 LHL---TWSCYEG-GQKHCGKCGPCYMRK 228 >mll5798 [R] COG0603 Predicted PP-loop superfamily ATPase Length = 232 Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 10/210 (4%) Query: 7 ALVVFSGGQDSTTCLVWALKNYEEVQAVTFNYNQRHXXXXXXXXXXXXXFNVKQHILDL- 65 ALV+ SGG DS + + + ++F+Y QRH V I+D+ Sbjct: 3 ALVICSGGLDSVSLAHKVATEQKLIGLLSFDYGQRHKKELGFAAICAKRLAVPHQIVDIR 62 Query: 66 GLLHQLAPNALTRDDIEIAAGEGEE--LPSTFVDGRNLLFLSFAAILAKQLEFTNIVTGV 123 + L+ +ALT D++++ G E + T V RN + L+ A +A + + T V Sbjct: 63 DVGRNLSGSALT-DNVDVPDGHYAEDSMRITVVPNRNAIMLAIAFGVAAAKKADAVATAV 121 Query: 124 CQTDFSGYPDCRDVFVKSLNVTLN--LSMDYEFVIHTPLMWLDKKETWKLADELGCFEYI 181 D YPDCR F+ + N L+ + ++ P + + K + + E + Sbjct: 122 HGGDHFIYPDCRPAFIDAFQTMQNHALAGYADIRLYAPYVNMSKAD---IVSEGAKYATP 178 Query: 182 REHTLTCYNGIIGSGCGTCPACLLRQRGLD 211 E T +CY G CG C C+ R+ D Sbjct: 179 FEATWSCYKG-GARHCGRCGTCVERREAFD 207 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.322 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,805,545 Number of extensions: 589208 Number of successful extensions: 820 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 813 Number of HSP's successfully gapped: 4 Length of query: 222 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 120 Effective length of database: 26,614,363 Effective search space: 3193723560 Effective search space used: 3193723560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)