BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0523.0043.p
         (73 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin2074 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp...   102   1e-22
BS_fhuC [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp...    87   4e-18
BH1081 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transpo...    83   8e-17
fecE [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport...    75   2e-14
all2584 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp...    75   2e-14

>lin2074 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components
          Length = 274

 Score =  102 bits (255), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MVVHDLNHASRYA HM+AIK G V++EG+P  VMT   L +VF I+ADI+ DPR+GVPLC
Sbjct: 195 MVVHDLNHASRYAHHMIAIKEGKVVAEGSPVNVMTEETLEDVFNIKADILIDPRSGVPLC 254

Query: 61  LPYE 64
           LPYE
Sbjct: 255 LPYE 258


>BS_fhuC [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components
          Length = 269

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 52/65 (80%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MV+HDLNHA+R++ +M+A+K G+VI EG   EVMT  +L++VF I+A+IV DPRT  P+C
Sbjct: 195 MVIHDLNHAARFSHYMIALKKGTVIKEGTALEVMTPDILKQVFQIDAEIVTDPRTNKPVC 254

Query: 61  LPYEL 65
           L Y+L
Sbjct: 255 LTYDL 259


>BH1081 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components
          Length = 274

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 51/64 (79%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MV+HDLNHA+R++ +++A++ G+V+ EG P +VM S VLR+VF IEA IV DP +G P+C
Sbjct: 195 MVLHDLNHAARFSDYLIALRKGTVVKEGTPEDVMCSDVLRDVFQIEATIVNDPTSGKPVC 254

Query: 61  LPYE 64
           L Y+
Sbjct: 255 LSYD 258


>fecE [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components
          Length = 255

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/60 (53%), Positives = 45/60 (75%)

Query: 2   VVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLCL 61
           V+HDLN ASRY   +V + +G V+++G P EVMT G+LR VF +EA+I P+P +G P+CL
Sbjct: 194 VLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAEIHPEPVSGRPMCL 253


>all2584 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
           systems, ATPase components
          Length = 289

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 44/62 (70%)

Query: 1   MVVHDLNHASRYAQHMVAIKSGSVISEGAPSEVMTSGVLREVFGIEADIVPDPRTGVPLC 60
           MV+HDLN A RYA ++V +K G + + G P +VMT  +++EVFG++  IV DP  G P+C
Sbjct: 219 MVLHDLNQACRYADYLVVVKQGRIFTAGEPKDVMTEEMVQEVFGLQCRIVSDPVVGTPMC 278

Query: 61  LP 62
           +P
Sbjct: 279 VP 280


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,503,188
Number of extensions: 179575
Number of successful extensions: 967
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 976
Number of HSP's successfully gapped: 52
Length of query: 73
Length of database: 38,378,431
Length adjustment: 44
Effective length of query: 29
Effective length of database: 33,303,735
Effective search space: 965808315
Effective search space used: 965808315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)