BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0042.p (202 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2074 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 187 7e-48 BS_fhuC [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 181 6e-46 BH1081 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transpo... 170 1e-42 BS_yfmF [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 160 1e-39 BS_yusV [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp... 159 2e-39 >lin2074 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 274 Score = 187 bits (476), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 88/140 (62%), Positives = 110/140 (78%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+T+ L I Y + +IV GL++++P KITALVGANGSGKSTILKTM+R+MKP G+V LD Sbjct: 4 LHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK IHN T+E+A+QLAILPQNP+APDGLTV EL+ YGR PHQ F ++T +DR II + Sbjct: 64 GKKIHNEPTREIAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWS 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + VT + F DRPID LSGG Sbjct: 124 LRVTNLTEFADRPIDSLSGG 143 >BS_fhuC [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 269 Score = 181 bits (459), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 86/140 (61%), Positives = 109/140 (77%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 L+TEQL IGY + +IV+ LN+S+P GKIT L+G NG GKSTILKTM+RIM+ +G+V L+ Sbjct: 4 LSTEQLGIGYGDRVIVEDLNISIPKGKITTLIGPNGCGKSTILKTMSRIMRSHAGAVYLN 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK+IH +STK++A+ +AILPQ P AP GLTV ELV YGR+PHQ GFG L EDR II A Sbjct: 64 GKAIHKMSTKDIAKDMAILPQTPEAPSGLTVHELVSYGRFPHQSGFGRLNDEDRRIIKWA 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + TGM + +RPI+ LSGG Sbjct: 124 LEETGMAEYAERPIEALSGG 143 >BH1081 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 274 Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 80/140 (57%), Positives = 103/140 (73%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 + TE LSIGY + IV+ LN+++P GKIT ++GANG GKSTILKT++RI P+SG LD Sbjct: 4 IYTESLSIGYGDTKIVEDLNIAIPEGKITTIIGANGCGKSTILKTISRIHAPQSGVAYLD 63 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 GK+IH T+++A+++AILPQ P +P LTV ELV YGR+PHQKGFG LT D I+ A Sbjct: 64 GKAIHKQKTRDIAKKMAILPQTPESPGELTVYELVSYGRFPHQKGFGRLTEADHQIVEKA 123 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + TG+E F RPI LSGG Sbjct: 124 LHSTGLEEFRHRPIQALSGG 143 >BS_yfmF [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 266 Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 75/141 (53%), Positives = 103/141 (73%) Query: 7 RLNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVML 66 +L +QL++ Y +I+ G++L + GKITAL+GANG GKSTILK++AR+M PKSG+V+L Sbjct: 3 KLAADQLTLSYDSTVIIDGVDLKIEEGKITALIGANGCGKSTILKSLARLMAPKSGTVLL 62 Query: 67 DGKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIAN 126 +GK IH +KEVA++LAILPQ+P AP+GLTV EL +GR+PH+K T ED ++ Sbjct: 63 EGKDIHRQPSKEVAKKLAILPQSPQAPEGLTVEELCYFGRHPHKKLLSKHTQEDHDMVEW 122 Query: 127 AITVTGMEAFHDRPIDRLSGG 147 A+ TGM DR +D LSGG Sbjct: 123 ALEATGMIELKDRTLDALSGG 143 >BS_yusV [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components Length = 275 Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 72/140 (51%), Positives = 104/140 (74%) Query: 8 LNTEQLSIGYAEAMIVKGLNLSLPTGKITALVGANGSGKSTILKTMARIMKPKSGSVMLD 67 ++TE LS+GY +A+I+ LNL++P G+IT +G+NG GKST+L+++AR+MKP+ GSV+L+ Sbjct: 6 ISTETLSLGYGDAVIIDELNLTIPKGEITVFIGSNGCGKSTLLRSLARLMKPRGGSVLLE 65 Query: 68 GKSIHNLSTKEVARQLAILPQNPTAPDGLTVSELVGYGRYPHQKGFGTLTPEDRSIIANA 127 G++I L TKEVA++LAILPQ P+AP+GLTV +LV GRYP+Q + ED + A Sbjct: 66 GRAIAKLPTKEVAKELAILPQGPSAPEGLTVHQLVKQGRYPYQNWLKQWSKEDEEAVERA 125 Query: 128 ITVTGMEAFHDRPIDRLSGG 147 + T +E DR +D LSGG Sbjct: 126 LKATKLEDMADRAVDSLSGG 145 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.132 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,616,482 Number of extensions: 630305 Number of successful extensions: 4799 Number of sequences better than 1.0e-05: 922 Number of HSP's gapped: 4761 Number of HSP's successfully gapped: 929 Length of query: 202 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 101 Effective length of database: 26,729,697 Effective search space: 2699699397 Effective search space used: 2699699397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 113 (48.1 bits)