BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0523.0041.p (344 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1082 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 296 3e-80 BS_fhuG [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 281 1e-75 lin2071 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 259 4e-69 SA0604 [P] COG0609 ABC-type Fe3+-siderophore transport system, p... 253 3e-67 CAC0788 [P] COG0609 ABC-type Fe3+-siderophore transport system, ... 234 1e-61 >BH1082 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 334 Score = 296 bits (759), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 153/315 (48%), Positives = 205/315 (65%), Gaps = 5/315 (1%) Query: 32 FIISMNTGLIRLSPTEVIHTLLGEGSQQQKLILFDFRLPRIVISLLVGAGFAVAGCILQS 91 FI+S+NTG +R+ P++V+ TL+G GS++Q+L+LF FRLPR+V++LL+GAG A+AG ILQ Sbjct: 20 FIVSLNTGAVRIPPSDVLKTLIGMGSERQELVLFSFRLPRMVLALLIGAGLAIAGTILQG 79 Query: 92 LSRNALAEPSTLGINAGAGFAVLIFISFVPATTAA----PIFXXXXXXXXXXXXXXXXIY 147 ++RNALA+P +GINAGAG AV++FISFV + IF IY Sbjct: 80 ITRNALADPGIIGINAGAGLAVVLFISFVQGSITGLSTFNIFLMPLFALMGAATAAVLIY 139 Query: 148 VLAYRREDGLSPTRLILXXXXXXXXXXXFQLILSLRLDPENYQFVATWLAGKIWGGDWRF 207 + A ++ + ++PTRLIL LI LR++P ++ WL G IWG +W + Sbjct: 140 LFALKKGE-VTPTRLILVGIGIAGLFSAAILIFQLRMEPRDFMSATIWLTGAIWGANWSY 198 Query: 208 VMALLPWILILVPFAFYKARVLNVLNLGDEIPAGLGLPVERERXXXXXXXXXXXXXXXXX 267 V++LLPWI++ +P YKAR LNVLNLGD + GLG VE ER Sbjct: 199 VLSLLPWIVLFLPLVLYKARYLNVLNLGDPVAVGLGTQVESERRWLLFAAVALAGSCVAV 258 Query: 268 XXXIGFVGLIAPHLARRIVGPRHQILLPACALVGALLLLTADTMARWILQPSEIPTGIVV 327 I F+GLIAPHLARR+VGP H +LLPA AL G+LLLL AD +AR +L P+EIP GIVV Sbjct: 259 GGAISFLGLIAPHLARRVVGPNHYVLLPAAALTGSLLLLFADFVARHLLAPNEIPVGIVV 318 Query: 328 AIIGAPYFLYLLARS 342 A GAPYF+YLL ++ Sbjct: 319 AFFGAPYFIYLLIKT 333 >BS_fhuG [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 336 Score = 281 bits (719), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 139/317 (43%), Positives = 200/317 (63%), Gaps = 6/317 (1%) Query: 31 MFIISMNTGLIRLSPTEVIHTLLGEGSQQQKLILFDFRLPRIVISLLVGAGFAVAGCILQ 90 +F IS+N G+I+++P + + G+G+ + +L+LF+FRLPRI++SLLVGAG +VAG ILQ Sbjct: 22 VFFISLNLGVIKIAPLKTLQVFFGQGTARDELVLFEFRLPRIILSLLVGAGISVAGAILQ 81 Query: 91 SLSRNALAEPSTLGINAGAGFAVLIFISFVPATTAA----PIFXXXXXXXXXXXXXXXXI 146 S+S+N LAEP LGINAG AV++FI F + + F I Sbjct: 82 SVSQNELAEPGILGINAGGSLAVVLFIYFFQGSASDLSFFGTFMLPFSALAGAILAAFLI 141 Query: 147 YVLAYRREDGLSPTRLILXXXXXXXXXXXFQLILSLRLDPENYQFVATWLAGKIWGGDWR 206 Y+LA+++ G++P RLIL LI L++DP ++ A W++G IWG +W Sbjct: 142 YILAWKK--GVTPIRLILVGIGVNAGFNALLLIFQLKMDPHDFMQAAVWISGSIWGANWN 199 Query: 207 FVMALLPWILILVPFAFYKARVLNVLNLGDEIPAGLGLPVERERXXXXXXXXXXXXXXXX 266 + A+LPWI+IL+ F YKAR LN++ LGD++ GLG VE+ER Sbjct: 200 MIWAILPWIVILLLFTLYKARYLNIMQLGDQLATGLGTAVEKERRILLLAAVTLAASCVA 259 Query: 267 XXXXIGFVGLIAPHLARRIVGPRHQILLPACALVGALLLLTADTMARWILQPSEIPTGIV 326 I F+GLIAPH+ARR+ GPRHQ L+P A +G+ L L ADT+AR +L PSEIP G+V Sbjct: 260 AAGGIAFLGLIAPHVARRLTGPRHQTLIPVSAFIGSFLFLLADTLARNVLAPSEIPVGLV 319 Query: 327 VAIIGAPYFLYLLARSK 343 ++++GAPYF+YLL ++ Sbjct: 320 ISVLGAPYFIYLLMKAN 336 >lin2071 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 340 Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 145/338 (42%), Positives = 200/338 (59%) Query: 6 LSSTPKKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQKLILF 65 ++ K++++R F S+N G +L EVI + G +LI+ Sbjct: 3 MTVAEKRKKSRRIWTLIILSVLIFCTFTYSVNAGYSKLPFIEVIKSFFGMADAGTQLIVS 62 Query: 66 DFRLPRIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFVPATTA 125 +FRLPRIVI+LLVGAG AV+G ILQ +S N LA+P LGIN GAG AV+++ISF P+T Sbjct: 63 EFRLPRIVIALLVGAGLAVSGTILQGISGNGLADPGILGINNGAGLAVMLYISFFPSTMD 122 Query: 126 APIFXXXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLILSLRLD 185 P+ +Y L+Y R +GL P RL+L +L++RLD Sbjct: 123 VPVLFMPFIGFVGAILTAFVVYGLSYSRSEGLLPNRLLLTGIAVAAAIAALITLLTVRLD 182 Query: 186 PENYQFVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPAGLGLP 245 P+NYQ A W+AG IW W++V ALLPW+++L AF K + L+VL+ G+++ GLG+ Sbjct: 183 PQNYQRYAEWMAGNIWASSWQYVYALLPWLIVLGAIAFMKVKTLDVLSFGNQVATGLGVR 242 Query: 246 VERERXXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALVGALLL 305 VERE+ I F+GLI PH+AR++VG H+ ++ AL G LLL Sbjct: 243 VEREKFVLLIVAVGLAAACVSVSGGIAFIGLIGPHIARKLVGSAHRWVMVTAALSGGLLL 302 Query: 306 LTADTMARWILQPSEIPTGIVVAIIGAPYFLYLLARSK 343 L ADT+ R I+QPSEI GIVVAIIGAPYFL+LLA++K Sbjct: 303 LLADTIGRLIIQPSEIFAGIVVAIIGAPYFLFLLAKAK 340 >SA0604 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 338 Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 183/309 (59%) Query: 35 SMNTGLIRLSPTEVIHTLLGEGSQQQKLILFDFRLPRIVISLLVGAGFAVAGCILQSLSR 94 S+ +G + TL+G+G +LIL DFRLPR++I++L GA +++G I+QS+++ Sbjct: 28 SITSGEYNIPVERFFKTLIGQGDAIDELILLDFRLPRMMITILAGAALSISGAIVQSVTK 87 Query: 95 NALAEPSTLGINAGAGFAVLIFISFVPATTAAPIFXXXXXXXXXXXXXXXXIYVLAYRRE 154 N +AEP LGINAG GFA+ +FI+ ++ I++ ++ + Sbjct: 88 NPIAEPGILGINAGGGFAIALFIAIGKINADNFVYVLPLISILGGITTALIIFIFSFNKN 147 Query: 155 DGLSPTRLILXXXXXXXXXXXFQLILSLRLDPENYQFVATWLAGKIWGGDWRFVMALLPW 214 +G++P ++L + + + D + F+A W AG IWG +W FV+A LPW Sbjct: 148 EGVTPASMVLIGVGLQTALYGGSITIMSKFDDKQSDFIAAWFAGNIWGDEWPFVIAFLPW 207 Query: 215 ILILVPFAFYKARVLNVLNLGDEIPAGLGLPVERERXXXXXXXXXXXXXXXXXXXXIGFV 274 +LI++P+ +K+ LN+++ GD I GLG+ + RER I F+ Sbjct: 208 VLIIIPYLLFKSNTLNIIHTGDNIARGLGVRLSRERLILFFIAVMLSSAAVAVAGSISFI 267 Query: 275 GLIAPHLARRIVGPRHQILLPACALVGALLLLTADTMARWILQPSEIPTGIVVAIIGAPY 334 GL+ PH+A+RIVGPRHQ+ LP LVGA LL+ ADT+ + +LQP +P GIVVAIIGAPY Sbjct: 268 GLMGPHIAKRIVGPRHQLFLPIAILVGACLLVIADTIGKIVLQPGGVPAGIVVAIIGAPY 327 Query: 335 FLYLLARSK 343 FLYL+ ++K Sbjct: 328 FLYLMYKTK 336 >CAC0788 [P] COG0609 ABC-type Fe3+-siderophore transport system, permease component Length = 336 Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 186/332 (56%) Query: 11 KKRRTRENXXXXXXXXXXXXMFIISMNTGLIRLSPTEVIHTLLGEGSQQQKLILFDFRLP 70 KKR + +IS+ G LS +I TLLG+GS + + +LFD R P Sbjct: 5 KKREMKHRLVLLIIILLTVLTIVISLGIGDYALSYNNLIPTLLGQGSFKDEFVLFDLRFP 64 Query: 71 RIVISLLVGAGFAVAGCILQSLSRNALAEPSTLGINAGAGFAVLIFISFVPATTAAPIFX 130 R+ I++L G A++G +LQ+++RN LA+P +GIN+GAG AV +F ++P + + Sbjct: 65 RMAITILSGMALALSGAVLQNITRNDLADPGIIGINSGAGVAVTVFFMYMPIDSKTFSYL 124 Query: 131 XXXXXXXXXXXXXXXIYVLAYRREDGLSPTRLILXXXXXXXXXXXFQLILSLRLDPENYQ 190 IY+LAY++ +G+ P RL+L +++ D Sbjct: 125 VPIIAFIGALITAVIIYLLAYKKNEGVQPLRLVLLGVGLSMALSGLMIVIMSLADRSKVD 184 Query: 191 FVATWLAGKIWGGDWRFVMALLPWILILVPFAFYKARVLNVLNLGDEIPAGLGLPVERER 250 F++ WLAG +WG DW FV+A+ P I+ILVP+ YK+ LN++ L ++ G+G+ +E+ER Sbjct: 185 FISKWLAGNVWGLDWAFVLAIFPCIVILVPYILYKSNTLNIIKLSRDVSIGVGMSIEKER 244 Query: 251 XXXXXXXXXXXXXXXXXXXXIGFVGLIAPHLARRIVGPRHQILLPACALVGALLLLTADT 310 I F+GL+APH+A+ +VG R+Q+ +P L+G LLL ADT Sbjct: 245 FKLLMASVALSSFAVSVTGNISFIGLMAPHIAKALVGHRNQMFIPIAILMGGWLLLLADT 304 Query: 311 MARWILQPSEIPTGIVVAIIGAPYFLYLLARS 342 + + +LQ IP GIVV++IGAPYF+YLL + Sbjct: 305 IGQHLLQSGNIPAGIVVSVIGAPYFIYLLLKK 336 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.144 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,342,290 Number of extensions: 686146 Number of successful extensions: 2124 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 1816 Number of HSP's successfully gapped: 173 Length of query: 344 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 237 Effective length of database: 26,037,693 Effective search space: 6170933241 Effective search space used: 6170933241 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)